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微生物 : Phaeobacter gallaeciensis

微生物株情報

NBRC番号 16654
学名 Phaeobacter gallaeciensis
別名（シノニム） Roseobacter gallaeciensis
由来 IFO 16654 <- IAM 14812 <- CIP 105210
他保存機関番号 ATCC 700781=CIP 105210=DSM 17395=IAM 14812
他株番号 BS 107
参考文献
9731295
Roseobacter gallaeciensis sp. nov., a new marine bacterium isolated from rearings and collectors of the scallop Pecten maximus. (Int J Syst Bacteriol. 1998)
16738106
Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera. (Int J Syst Evol Microbiol. 2006)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemasePGA1_c10880
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class APGA1_c09800
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferasePGA1_c16880
TRPE
(NRULE_0143)
Anthranilate synthase component IPGA1_c16860
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginasePGA1_c16370
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphatasePGA1_c36070
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class APGA1_c09800
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenasePGA1_c21660
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymerasePGA1_c20940
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymerasePGA1_c20930
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductasePGA1_c03390
 
PHAP3
(NRULE_0376)
PhasinPGA1_c20920
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinPGA1_c13180 PGA1_c07900 PGA1_262p02200
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPGA1_262p02180
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRPGA1_c02530
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRPGA1_c03310
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPGA1_262p02180
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinPGA1_262p02190
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinPGA1_262p02200
Nitrile hydratase(NFUNC_0002)
必須A
NHAA
(NRULE_0001)
Nitrile hydratase subunit alphaPGA1_c23880
NHAB
(NRULE_0002)
Nitrile hydratase subunit betaPGA1_c23870
任意 
P14K
(NRULE_0006)
Nitrile hydratase activator P14KPGA1_c23860
 
COBW
(NRULE_0007)
CobW/P47K family proteinPGA1_c08180 PGA1_c20610 PGA1_c32530
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class APGA1_c09800
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthasePGA1_c08920
RIBA
(NRULE_0201)
GTP cyclohydrolase-2PGA1_c33340 PGA1_c08920
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDPGA1_c08870
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthasePGA1_c34020 PGA1_c08930
RIBE
(NRULE_0204)
Riboflavin synthasePGA1_c08910
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFPGA1_c24990
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterPGA1_c13880

ゲノム配列情報

BioProject IDPRJNA19355
ローカスタグPGA1
INSDC entriesCP002976
ステータスComplete
解析状況
コンティグ数4
サイズ(bp) 4,227,134
遺伝子数 3,875
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life. (ISME J. 2012) PMID: 22717884

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
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