BLAST table : Ansam_00350

DB	UniProtKB

	accession	Evalue	Score	Ident.	link	product	gene	organism
1	Q8KUI1_ACTPA (Q8KUI1)	0.0	689	100%	UniProt GenBank	RNA polymerase sigma factor	asm31	Actinosynnema pretiosum subsp. auranticum
2	C6W8L5_ACTMD (C6W8L5)	0.0	660	97%	UniProt GenBank	RNA polymerase sigma factor	Amir_3204	Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971)
3	Q73W40_MYCPA (Q73W40)	1e-118	429	65%	UniProt GenBank	RNA polymerase sigma factor	sigA MAP_2820	Mycobacterium paratuberculosis
4	Q9S5K3_MYCLE (Q9S5K3)	1e-118	428	65%	UniProt GenBank	RNA polymerase sigma factor	rpoT	Mycobacterium leprae
5	Q59532_MYCLE (Q59532)	1e-118	427	65%	UniProt GenBank	RNA polymerase sigma factor	rpoT ML1022	Mycobacterium leprae
6	B8ZQV8_MYCLB (B8ZQV8)	1e-118	427	65%	UniProt GenBank	RNA polymerase sigma factor	rpoT MLBr01022	Mycobacterium leprae (strain Br4923)
7	A0QIN4_MYCA1 (A0QIN4)	1e-117	427	65%	UniProt GenBank	RNA polymerase sigma factor	MAV_3595	Mycobacterium avium (strain 104)
8	F7PAK8_MYCPA (F7PAK8)	1e-117	427	65%	UniProt GenBank	RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family	MAPs_08600	Mycobacterium avium subsp. paratuberculosis S397
9	D5PJP8_9MYCO (D5PJP8)	1e-117	427	65%	UniProt GenBank	RNA polymerase sigma factor	sigA HMPREF0591_6392	Mycobacterium parascrofulaceum ATCC BAA-614
10	A0QW02_MYCS2 (A0QW02)	1e-117	426	65%	UniProt GenBank	RNA polymerase sigma factor	MSMEG_2758	Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
11	Q59552_MYCSM (Q59552)	1e-117	426	65%	UniProt GenBank	RNA polymerase sigma factor	mysA	Mycobacterium smegmatis
12	D6ZER0_SEGRD (D6ZER0)	1e-117	425	66%	UniProt GenBank	RNA polymerase sigma factor	Srot_0961	Segniliparus rotundus (strain ATCC BAA-972 / CDC 1076 / CIP 108378 / DSM 44985 / JCM 13578)
13	Q60158_MYCBO (Q60158)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	rpoV	Mycobacterium bovis
14	C6DLK4_MYCTK (C6DLK4)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	TBMG_01270	Mycobacterium tuberculosis (strain KZN 1435 / MDR)
15	C1AFG2_MYCBT (C1AFG2)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	sigA JTY_2710	Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019)
16	A5WQV6_MYCTF (A5WQV6)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	TBFG_12718	Mycobacterium tuberculosis (strain F11)
17	A5U655_MYCTA (A5U655)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	sigA MRA_2731	Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)
18	A1KM41_MYCBP (A1KM41)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	sigA BCG_2716	Mycobacterium bovis (strain BCG / Pasteur 1173P2)
19	F7WWV0_MYCTU (F7WWV0)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor sigA	CCDC5180_2454	Mycobacterium tuberculosis CCDC5180
20	F7WHQ3_MYCTU (F7WHQ3)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor sigA	CCDC5079_2484	Mycobacterium tuberculosis CCDC5079
21	F2V6Y8_MYCTU (F2V6Y8)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	TBPG_02217	Mycobacterium tuberculosis W-148
22	F2GLF3_MYCTU (F2GLF3)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	TBSG_01281	Mycobacterium tuberculosis KZN 4207
23	E2W8G4_MYCTU (E2W8G4)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	TMKG_03134	Mycobacterium tuberculosis SUMu011
24	E2VKP1_MYCTU (E2VKP1)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	TMIG_02203	Mycobacterium tuberculosis SUMu009
25	E2VBM2_MYCTU (E2VBM2)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	TMHG_01902	Mycobacterium tuberculosis SUMu008
26	E2UXA0_MYCTU (E2UXA0)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	TMGG_02166	Mycobacterium tuberculosis SUMu007
27	E2UP70_MYCTU (E2UP70)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	TMFG_03601	Mycobacterium tuberculosis SUMu006
28	E2U1V1_MYCTU (E2U1V1)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	TMDG_00417	Mycobacterium tuberculosis SUMu004
29	E2TCL1_MYCTU (E2TCL1)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	TMBG_02840	Mycobacterium tuberculosis SUMu002
30	D6FJS6_MYCTU (D6FJS6)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	TBNG_03352	Mycobacterium tuberculosis CPHL_A
31	D5Z6N1_MYCTU (D5Z6N1)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	TBIG_02057	Mycobacterium tuberculosis GM 1503
32	RPOD_MYCTU (P0A602)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor rpoD	rpoD mysA rpoV sigA Rv2703 MT2777 MTCY05A6.24	Mycobacterium tuberculosis
33	RPOD_MYCBO (P0A603)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor rpoD	rpoD mysA rpoV sigA Mb2722	Mycobacterium bovis
34	Q59502_MYCBO (Q59502)	1e-117	424	64%	UniProt GenBank	RNA polymerase sigma factor	rpoV	Mycobacterium bovis
35	E9ZMD5_MYCTU (E9ZMD5)	1e-116	424	64%	UniProt GenBank	RNA polymerase sigma factor	TMMG_02712	Mycobacterium tuberculosis CDC1551A
36	E2WKJ1_MYCTU (E2WKJ1)	1e-116	424	64%	UniProt GenBank	RNA polymerase sigma factor	TMLG_02417	Mycobacterium tuberculosis SUMu012
37	E2VX99_MYCTU (E2VX99)	1e-116	424	64%	UniProt GenBank	RNA polymerase sigma factor	TMJG_01687	Mycobacterium tuberculosis SUMu010
38	E2TPP8_MYCTU (E2TPP8)	1e-116	424	64%	UniProt GenBank	RNA polymerase sigma factor	TMCG_01951	Mycobacterium tuberculosis SUMu003
39	A3PYI3_MYCSJ (A3PYI3)	1e-116	424	65%	UniProt GenBank	RNA polymerase sigma factor	Mjls_2174	Mycobacterium sp. (strain JLS)
40	E2UCK2_MYCTU (E2UCK2)	1e-116	424	64%	UniProt GenBank	RNA polymerase sigma factor	TMEG_03382	Mycobacterium tuberculosis SUMu005
41	E1HCE9_MYCTU (E1HCE9)	1e-116	424	64%	UniProt GenBank	RNA polymerase sigma factor	TMAG_03090	Mycobacterium tuberculosis SUMu001
42	C8XG60_NAKMY (C8XG60)	1e-116	424	63%	UniProt GenBank	RNA polymerase sigma factor	Namu_3764	Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) Microsphaera multipartita
43	Q1B9Z1_MYCSS (Q1B9Z1)	1e-116	424	65%	UniProt GenBank	RNA polymerase sigma factor	Mmcs_2185	Mycobacterium sp. (strain MCS)
44	A1UF21_MYCSK (A1UF21)	1e-116	424	65%	UniProt GenBank	RNA polymerase sigma factor	Mkms_2231	Mycobacterium sp. (strain KMS)
45	F8M3F7_9MYCO (F8M3F7)	1e-116	424	64%	UniProt GenBank	RNA polymerase sigma factor SIGA (SIGMA-A)	sigA MAF_27070	Mycobacterium africanum GM041182
46	Q5YT84_NOCFA (Q5YT84)	1e-116	424	65%	UniProt GenBank	RNA polymerase sigma factor	sigA NFA_37590	Nocardia farcinica
47	C0ZYT9_RHOE4 (C0ZYT9)	1e-116	423	65%	UniProt GenBank	RNA polymerase sigma factor	sigA RER_28160	Rhodococcus erythropolis (strain PR4 / NBRC 100887)
48	B2HLZ7_MYCMM (B2HLZ7)	1e-116	423	64%	UniProt GenBank	RNA polymerase sigma factor	sigA MMAR_2011	Mycobacterium marinum (strain ATCC BAA-535 / M)
49	E5XMD4_9ACTO (E5XMD4)	1e-116	423	65%	UniProt GenBank	RNA polymerase sigma factor	HMPREF9336_00654	Segniliparus rugosus ATCC BAA-974
50	C3JLL5_RHOER (C3JLL5)	1e-116	423	65%	UniProt GenBank	RNA polymerase sigma factor	RHOER0001_6281	Rhodococcus erythropolis SK121
51	A1T7X4_MYCVP (A1T7X4)	1e-116	423	64%	UniProt GenBank	RNA polymerase sigma factor	Mvan_2461	Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
52	A0PT58_MYCUA (A0PT58)	1e-116	422	64%	UniProt GenBank	RNA polymerase sigma factor	sigA MUL_3341	Mycobacterium ulcerans (strain Agy99)
53	Q0S1J1_RHOSR (Q0S1J1)	1e-116	422	64%	UniProt GenBank	RNA polymerase sigma factor	sigA RHA1_ro06823	Rhodococcus sp. (strain RHA1)
54	Q8VM92_RHOFA (Q8VM92)	1e-116	422	61%	UniProt GenBank	RNA polymerase sigma factor	rofA	Rhodococcus fascians
55	D5UMZ4_TSUPD (D5UMZ4)	1e-116	422	61%	UniProt GenBank	RNA polymerase sigma factor	Tpau_1878	Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) Corynebacterium paurometabolum
56	C1B466_RHOOB (C1B466)	1e-116	421	64%	UniProt GenBank	RNA polymerase sigma factor	sigA ROP_68080	Rhodococcus opacus (strain B4)
57	C6L2K0_RHOOP (C6L2K0)	1e-116	421	64%	UniProt GenBank	RNA polymerase sigma factor	sigA	Rhodococcus opacus Nocardia opaca
58	A4FAP1_SACEN (A4FAP1)	1e-116	421	64%	UniProt GenBank	RNA polymerase sigma factor	sigA SACE_1801	Saccharopolyspora erythraea (strain NRRL 23338)
59	C7MYK8_SACVD (C7MYK8)	1e-115	421	64%	UniProt GenBank	RNA polymerase sigma factor	Svir_24330	Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)
60	A2VL47_MYCTU (A2VL47)	1e-115	421	64%	UniProt GenBank	RNA polymerase sigma factor	TBCG_02642	Mycobacterium tuberculosis C
61	B1MCW6_MYCA9 (B1MCW6)	1e-115	420	64%	UniProt GenBank	RNA polymerase sigma factor	MAB_3009	Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)
62	D5ZJN1_MYCTU (D5ZJN1)	1e-115	420	64%	UniProt GenBank	RNA polymerase sigma factor	TBJG_02298	Mycobacterium tuberculosis T17
63	E4WGN1_RHOE1 (E4WGN1)	1e-115	419	64%	UniProt GenBank	RNA polymerase sigma factor	sigA REQ_20270	Rhodococcus equi (strain 103S) Corynebacterium equi
64	E9SV86_COREQ (E9SV86)	1e-115	419	64%	UniProt GenBank	RNA polymerase sigma factor	sigA HMPREF0724_10154	Rhodococcus equi ATCC 33707
65	C4LJ07_CORK4 (C4LJ07)	1e-115	419	63%	UniProt GenBank	RNA polymerase sigma factor	sigA ckrop_1061	Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717)
66	E6TER2_MYCSR (E6TER2)	1e-115	419	64%	UniProt GenBank	RNA polymerase sigma factor	Mspyr1_32840	Mycobacterium sp. (strain Spyr1)
67	A4TCR0_MYCGI (A4TCR0)	1e-115	419	64%	UniProt GenBank	RNA polymerase sigma factor	Mflv_3939	Mycobacterium gilvum (strain PYR-GCK) Mycobacterium flavescens (strain ATCC 700033 / PYR-GCK)
68	F5YW33_9MYCO (F5YW33)	1e-115	418	64%	UniProt GenBank	RNA polymerase sigma factor	sigB JDM601_2444	Mycobacterium sp. JDM601
69	E6J7T2_9ACTO (E6J7T2)	1e-114	417	64%	UniProt GenBank	RNA polymerase sigma factor	ES5_06402	Dietzia cinnamea P4
70	E0MYC7_9CORY (E0MYC7)	1e-114	417	63%	UniProt GenBank	RNA polymerase sigma factor	rpoD HMPREF0277_1511	Corynebacterium accolens ATCC 49726
71	C0WKU7_9CORY (C0WKU7)	1e-114	417	63%	UniProt GenBank	RNA polymerase sigma factor	HMPREF0276_2083	Corynebacterium accolens ATCC 49725
72	E2MU65_9CORY (E2MU65)	1e-114	417	64%	UniProt GenBank	RNA polymerase sigma factor	CORAM0001_0883	Corynebacterium amycolatum SK46
73	F6ELG3_9MYCO (F6ELG3)	1e-114	416	62%	UniProt GenBank	RNA polymerase sigma factor	AS9A_1764	Amycolicicoccus subflavus DQS3-9A1
74	E2S1F6_9CORY (E2S1F6)	1e-114	416	63%	UniProt GenBank	RNA polymerase sigma factor	rpoD HMPREF0305_10358	Corynebacterium pseudogenitalium ATCC 33035
75	C6RAA1_9CORY (C6RAA1)	1e-114	416	63%	UniProt GenBank	RNA polymerase sigma factor	CORTU0001_1528	Corynebacterium tuberculostearicum SK141
76	F4CRF9_9PSEU (F4CRF9)	1e-114	416	64%	UniProt GenBank	RNA polymerase sigma factor	Psed_3051	Pseudonocardia dioxanivorans CB1190
77	C6WAJ3_ACTMD (C6WAJ3)	1e-114	416	64%	UniProt GenBank	RNA polymerase sigma factor	Amir_1509	Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971)
78	C0VVP2_9CORY (C0VVP2)	1e-114	416	63%	UniProt GenBank	RNA polymerase sigma factor	HMPREF0294_1900	Corynebacterium glucuronolyticum ATCC 51867
79	D9UXU1_9ACTO (D9UXU1)	1e-114	416	63%	UniProt GenBank	RNA polymerase sigma factor	SSMG_02125	Streptomyces sp. AA4
80	C2GI30_9CORY (C2GI30)	1e-114	416	63%	UniProt GenBank	RNA polymerase sigma factor	HMPREF0293_1573	Corynebacterium glucuronolyticum ATCC 51866
81	F8U446_9NOCA (F8U446)	1e-114	415	64%	UniProt GenBank	Sigma70 transcriptional factor	sigA	Rhodococcus ruber
82	C8RTJ4_CORJE (C8RTJ4)	1e-114	415	63%	UniProt GenBank	RNA polymerase sigma factor	sigA HMPREF0297_1346	Corynebacterium jeikeium ATCC 43734
83	Q4JVA6_CORJK (Q4JVA6)	1e-114	415	63%	UniProt GenBank	RNA polymerase sigma factor	sigA jk1087	Corynebacterium jeikeium (strain K411)
84	C3PGU1_CORA7 (C3PGU1)	1e-113	414	63%	UniProt GenBank	RNA polymerase sigma factor	sigA cauri_1452	Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) Corynebacterium nigricans
85	Q8FPH4_COREF (Q8FPH4)	1e-113	414	61%	UniProt GenBank	RNA polymerase sigma factor	sigA CE1804	Corynebacterium efficiens
86	Q9ANT7_9CORY (Q9ANT7)	1e-113	414	61%	UniProt GenBank	RNA polymerase sigma factor	sigA	[Brevibacterium] flavum
87	D2SE95_GEOOG (D2SE95)	1e-113	414	63%	UniProt GenBank	RNA polymerase sigma factor	Gobs_1864	Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20)
88	D8HXV4_AMYMU (D8HXV4)	1e-113	414	63%	UniProt GenBank	RNA polymerase sigma factor	rpoD AMED_2601	Amycolatopsis mediterranei (strain U-32)
89	D7WCB9_9CORY (D7WCB9)	1e-113	414	63%	UniProt GenBank	RNA polymerase sigma factor	rpoD HMPREF0291_11457	Corynebacterium genitalium ATCC 33030
90	Q8NPA3_CORGL (Q8NPA3)	1e-113	413	61%	UniProt GenBank	RNA polymerase sigma factor	Cgl1911	Corynebacterium glutamicum Brevibacterium flavum
91	A4QER8_CORGB (A4QER8)	1e-113	413	61%	UniProt GenBank	RNA polymerase sigma factor	cgR_1740	Corynebacterium glutamicum (strain R)
92	Q6M4B0_CORGL (Q6M4B0)	1e-113	413	61%	UniProt GenBank	RNA polymerase sigma factor	sigA cg2092	Corynebacterium glutamicum Brevibacterium flavum
93	D5NUL0_CORAM (D5NUL0)	1e-113	413	62%	UniProt GenBank	RNA polymerase sigma factor	HMPREF0281_00258	Corynebacterium ammoniagenes DSM 20306
94	F8DXM4_9CORY (F8DXM4)	1e-113	413	63%	UniProt GenBank	RNA polymerase sigma factor A	sigA CRES_1178	Corynebacterium resistens DSM 45100
95	F1YMP2_9ACTO (F1YMP2)	1e-113	413	64%	UniProt GenBank	RNA polymerase sigma factor	SCNU_15939	Gordonia neofelifaecis NRRL B-59395
96	Q9AGV7_CORAM (Q9AGV7)	1e-113	412	62%	UniProt GenBank	RNA polymerase sigma factor	rpoD	Corynebacterium ammoniagenes Brevibacterium ammoniagenes
97	D0LBS9_GORB4 (D0LBS9)	1e-113	412	63%	UniProt GenBank	RNA polymerase sigma factor	Gbro_2245	Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) Rhodococcus bronchialis
98	C8NPB1_COREF (C8NPB1)	1e-113	412	61%	UniProt GenBank	RNA polymerase sigma factor	sigA HMPREF0290_1836	Corynebacterium efficiens YS-314
99	C0XSL9_9CORY (C0XSL9)	1e-112	411	62%	UniProt GenBank	RNA polymerase sigma factor	HMPREF0298_1439	Corynebacterium lipophiloflavum DSM 44291
100	C2CP91_CORST (C2CP91)	1e-112	410	64%	UniProt GenBank	RNA polymerase sigma factor	HMPREF0308_1220	Corynebacterium striatum ATCC 6940

accession

alignment

Evalue

Score

Ident.

link

information

pubmed

Q8KUI1_ACTPA
(Q8KUI1)

0.0

689

100%

Product: RNA polymerase sigma factor
Gene: asm31
Organism: Actinosynnema pretiosum subsp. auranticum

1uniprot[Pubmed] 12060743 [Medline] 22056096
The biosynthetic gene cluster of the maytansinoid antitumor agent ansamitocin from Actinosynnema pretiosum.(Proc. Natl. Acad. Sci. U.S.A.) [2002]

C6W8L5_ACTMD
(C6W8L5)

0.0

660

97%

Product: RNA polymerase sigma factor
Gene: Amir_3204
Organism: Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971)

1uniprot
Complete genome sequence of Actinosynnema mirum type strain (101).(Stand. Genomic Sci.) [2009]

Q73W40_MYCPA
(Q73W40)

1e-118

429

65%

Product: RNA polymerase sigma factor
Gene: sigA
MAP_2820
Organism: Mycobacterium paratuberculosis

1uniprot[Pubmed] 16116077
The complete genome sequence of Mycobacterium avium subspecies paratuberculosis.(Proc. Natl. Acad. Sci. U.S.A.) [2005]

Q59532_MYCLE
(Q59532)

1e-118

427

65%

Product: RNA polymerase sigma factor
Gene: rpoT
ML1022
Organism: Mycobacterium leprae

1uniprot[Pubmed] 11234002 [Medline] 21128732
Massive gene decay in the leprosy bacillus.(Nature) [2001]

B8ZQV8_MYCLB
(B8ZQV8)

1e-118

427

65%

Product: RNA polymerase sigma factor
Gene: rpoT
MLBr01022
Organism: Mycobacterium leprae (strain Br4923)

1uniprot[Pubmed] 19881526
Comparative genomic and phylogeographic analysis of Mycobacterium leprae.(Nat. Genet.) [2009]

Q59552_MYCSM
(Q59552)

1e-117

426

65%

Product: RNA polymerase sigma factor
Gene: mysA
Organism: Mycobacterium smegmatis

1uniprot[Pubmed] 7746156 [Medline] 95264921
Characterization of RNA polymerase and two sigma-factor genes from Mycobacterium smegmatis.(Mol. Microbiol.) [1995]

D6ZER0_SEGRD
(D6ZER0)

1e-117

425

66%

Product: RNA polymerase sigma factor
Gene: Srot_0961
Organism: Segniliparus rotundus (strain ATCC BAA-972 / CDC 1076 / CIP 108378 / DSM 44985 / JCM 13578)

1uniprot
Complete genome sequence of Segniliparus rotundus type strain (CDC 1076T).(Stand. Genomic Sci.) [2010]

Q60158_MYCBO
(Q60158)

1e-117

424

64%

Product: RNA polymerase sigma factor
Gene: rpoV
Organism: Mycobacterium bovis

1uniprot[Pubmed] 7644534 [Medline] 95372414
Mutation of the principal sigma factor causes loss of virulence in a strain of the Mycobacterium tuberculosis complex.(Proc. Natl. Acad. Sci. U.S.A.) [1995]

C1AFG2_MYCBT
(C1AFG2)

1e-117

424

64%

Product: RNA polymerase sigma factor
Gene: sigA
JTY_2710
Organism: Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019)

1uniprot[Pubmed] 19200449
Whole genome sequence analysis of Mycobacterium bovis bacillus Calmette-Guerin (BCG) Tokyo 172: a comparative study of BCG vaccine substrains.(Vaccine) [2009]

A1KM41_MYCBP
(A1KM41)

1e-117

424

64%

Product: RNA polymerase sigma factor
Gene: sigA
BCG_2716
Organism: Mycobacterium bovis (strain BCG / Pasteur 1173P2)

1uniprot[Pubmed] 17372194
Genome plasticity of BCG and impact on vaccine efficacy.(Proc. Natl. Acad. Sci. U.S.A.) [2007]

RPOD_MYCTU
(P0A602)

1e-117

424

64%

Product: RNA polymerase sigma factor rpoD
Gene: rpoD
mysA
rpoV
sigA
Rv2703
MT2777
MTCY05A6.24
Organism: Mycobacterium tuberculosis

[pubmed all]
1uniprot[Pubmed] 7489918 [Medline] 96084954 Genomic organization of the mycobacterial sigma gene cluster.(Gene) [1995]
2uniprot[Pubmed] 7644534 [Medline] 95372414 Mutation of the principal sigma factor causes loss of virulence in a strain of the Mycobacterium tuberculosis complex.(Proc. Natl. Acad. Sci. U.S.A.) [1995]
3uniprot[Pubmed] 9634230 [Medline] 98295987 Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.(Nature) [1998]
4uniprot[Pubmed] 12218036 [Medline] 22206494 Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains.(J. Bacteriol.) [2002]
5uniprot[Pubmed] 19099550 targetTB: a target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis.(BMC Syst. Biol.) [2008]

RPOD_MYCBO
(P0A603)

1e-117

424

64%

Product: RNA polymerase sigma factor rpoD
Gene: rpoD
mysA
rpoV
sigA
Mb2722
Organism: Mycobacterium bovis

1uniprot[Pubmed] 12788972 [Medline] 22709107
The complete genome sequence of Mycobacterium bovis.(Proc. Natl. Acad. Sci. U.S.A.) [2003]

Q59502_MYCBO
(Q59502)

1e-117

424

64%

Product: RNA polymerase sigma factor
Gene: rpoV
Organism: Mycobacterium bovis

Q5YT84_NOCFA
(Q5YT84)

1e-116

424

65%

Product: RNA polymerase sigma factor
Gene: sigA
NFA_37590
Organism: Nocardia farcinica

1uniprot[Pubmed] 15466710
The complete genomic sequence of Nocardia farcinica IFM 10152.(Proc. Natl. Acad. Sci. U.S.A.) [2004]

C0ZYT9_RHOE4
(C0ZYT9)

1e-116

423

65%

Product: RNA polymerase sigma factor
Gene: sigA
RER_28160
Organism: Rhodococcus erythropolis (strain PR4 / NBRC 100887)

1uniprot
Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4.(Environ. Microbiol.) [2006]

B2HLZ7_MYCMM
(B2HLZ7)

1e-116

423

64%

Product: RNA polymerase sigma factor
Gene: sigA
MMAR_2011
Organism: Mycobacterium marinum (strain ATCC BAA-535 / M)

1uniprot[Pubmed] 18403782
Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis.(Genome Res.) [2008]

A0PT58_MYCUA
(A0PT58)

1e-116

422

64%

Product: RNA polymerase sigma factor
Gene: sigA
MUL_3341
Organism: Mycobacterium ulcerans (strain Agy99)

1uniprot[Pubmed] 17210928
Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer.(Genome Res.) [2007]

Q0S1J1_RHOSR
(Q0S1J1)

1e-116

422

64%

Product: RNA polymerase sigma factor
Gene: sigA
RHA1_ro06823
Organism: Rhodococcus sp. (strain RHA1)

1uniprot[Pubmed] 17030794
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse.(Proc. Natl. Acad. Sci. U.S.A.) [2006]

C6L2K0_RHOOP
(C6L2K0)

1e-116

421

64%

Product: RNA polymerase sigma factor
Gene: sigA
Organism: Rhodococcus opacus
Nocardia opaca

1uniprot
Cloning and Characterization of sigA and sigB Genes from Rhodococcus opacus Strain B4: Involvement of sigB in Organic Solvent Tolerance.(J. Environ. Biotechnol.) [2009]

A4FAP1_SACEN
(A4FAP1)

1e-116

421

64%

Product: RNA polymerase sigma factor
Gene: sigA
SACE_1801
Organism: Saccharopolyspora erythraea (strain NRRL 23338)

1uniprot[Pubmed] 17369815
Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338.(Nat. Biotechnol.) [2007]

C7MYK8_SACVD
(C7MYK8)

1e-115

421

64%

Product: RNA polymerase sigma factor
Gene: Svir_24330
Organism: Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)

1uniprot
Complete genome sequence of Saccharomonospora viridis type strain (P101T).(Stand. Genomic Sci.) [2009]

E4WGN1_RHOE1
(E4WGN1)

1e-115

419

64%

Product: RNA polymerase sigma factor
Gene: sigA
REQ_20270
Organism: Rhodococcus equi (strain 103S)
Corynebacterium equi

1uniprot[Pubmed] 20941392
The genome of a pathogenic rhodococcus: cooptive virulence underpinned by key gene acquisitions.(PLoS Genet.) [2010]

C4LJ07_CORK4
(C4LJ07)

1e-115

419

63%

Product: RNA polymerase sigma factor
Gene: sigA
ckrop_1061
Organism: Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717)

1uniprot[Pubmed] 18430482
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids.(J. Biotechnol.) [2008]

C6WAJ3_ACTMD
(C6WAJ3)

1e-114

416

64%

Product: RNA polymerase sigma factor
Gene: Amir_1509
Organism: Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971)

1uniprot
Complete genome sequence of Actinosynnema mirum type strain (101).(Stand. Genomic Sci.) [2009]

Q4JVA6_CORJK
(Q4JVA6)

1e-114

415

63%

Product: RNA polymerase sigma factor
Gene: sigA
jk1087
Organism: Corynebacterium jeikeium (strain K411)

1uniprot[Pubmed] 15968079
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.(J. Bacteriol.) [2005]

C3PGU1_CORA7
(C3PGU1)

1e-113

414

63%

Product: RNA polymerase sigma factor
Gene: sigA
cauri_1452
Organism: Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1)
Corynebacterium nigricans

1uniprot[Pubmed] 20137072
Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion.(BMC Genomics) [2010]

Q8FPH4_COREF
(Q8FPH4)

1e-113

414

61%

Product: RNA polymerase sigma factor
Gene: sigA
CE1804
Organism: Corynebacterium efficiens

1uniprot[Pubmed] 12840036 [Medline] 22723752
Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens.(Genome Res.) [2003]

Q9ANT7_9CORY
(Q9ANT7)

1e-113

414

61%

Product: RNA polymerase sigma factor
Gene: sigA
Organism: [Brevibacterium] flavum

1uniprot[Pubmed] 11683358 [Medline] 21539544
Cloning and transcriptional characterization of two sigma factor genes, sigA and sigB, from Brevibacterium flavum.(Curr. Microbiol.) [2001]

D8HXV4_AMYMU
(D8HXV4)

1e-113

414

63%

Product: RNA polymerase sigma factor
Gene: rpoD
AMED_2601
Organism: Amycolatopsis mediterranei (strain U-32)

1uniprot[Pubmed] 20567260
Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism.(Cell Res.) [2010]

A4QER8_CORGB
(A4QER8)

1e-113

413

61%

Product: RNA polymerase sigma factor
Gene: cgR_1740
Organism: Corynebacterium glutamicum (strain R)

1uniprot[Pubmed] 17379713
Comparative analysis of the Corynebacterium glutamicum group and complete genome sequence of strain R.(Microbiology) [2007]

Q6M4B0_CORGL
(Q6M4B0)

1e-113

413

61%

Product: RNA polymerase sigma factor
Gene: sigA
cg2092
Organism: Corynebacterium glutamicum
Brevibacterium flavum

1uniprot[Pubmed] 12948626 [Medline] 22830012
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.(J. Biotechnol.) [2003]