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Aran_00010 : CDS information

close this sectionLocation

Organism
StrainTü303
Entry nameAranciamycin
Contig
Start / Stop / Direction1,541 / 711 / - [in whole cluster]
1,541 / 711 / - [in contig]
Locationcomplement(711..1541) [in whole cluster]
complement(711..1541) [in contig]
TypeCDS
Length831 bp (276 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.1 general function
Productputative DNA-binding protein
Product (GenBank)SCC75A.25c
Gene
Gene (GenBank)
EC number
Keyword
Note
  • It is supposed that this ORF is not involved in aranciamycin biosynthesis.
Note (GenBank)
  • hypothetical protein; orf1
Reference
ACC
PmId
[17357167] Cloning and heterologous expression of the aranciamycin biosynthetic gene cluster revealed a new flexible glycosyltransferase. (Chembiochem. , 2007)
comment
aranciamycin生合成gene cluster(ara-cluster)のクローニングとシークエンス報告。
ara clusterの5'末はORF4だという記述がある（理由は不明）。

ORF1(276aa): unknown
Related Reference
ACC
Q9FDT3
PmId
comment
Blast 239th, id31%, 5e-22
Streptomyces lividans_cpb1
Chitinase promoter binding protein 1

S. lividansでChitinase（ChiA)のプロモータに結合する因子を単離した論文。
Cpb1は、他の主要なregulatorsの機能を補助または修飾することにより、chitinase遺伝子発現において補助的因子として働くかもしれない。
Family/Domain
FD
IPR001387
comment
[IPR001387] Helix-turn-helix type 3 (Domain)

close this sectionSequence

selected fasta
>putative DNA-binding protein [SCC75A.25c]
MQSRGDDLSSALSRFADAAQRCRLAAGLSREEVAERTRCAEADVERIENAEQMPSRSYAV
EADRLLGADGALVALWPPLVRSAYPEWFWQVVELEQQASFVQEFETVAIPGLLQTEAYAR
AVFCTAHPTASTLRIEQFVTARLDRQRILDRPDPPHIMIALDEAVLRRRVGGSRTMSEQL
GHLLAMADLPKVNVQVVPFSVREHPGSMTPFRIMGFCEGPEFLYGESFIGGQVTTDVHQL
GQHHLAFNLIQARALSPQDSRVLIRRLRKEMEGGPD
selected fasta
>putative DNA-binding protein [SCC75A.25c]
ATGCAGTCGCGCGGTGACGATCTGTCCTCAGCGCTGAGCCGCTTCGCGGACGCCGCACAG
CGGTGCCGGTTGGCGGCCGGGCTCTCCCGCGAGGAGGTCGCCGAGCGGACGCGGTGCGCC
GAGGCGGACGTCGAACGGATCGAGAACGCCGAGCAGATGCCCTCCCGCAGCTACGCTGTG
GAGGCCGACCGGCTTCTCGGCGCGGACGGCGCTCTGGTGGCCCTGTGGCCGCCTCTCGTC
AGATCCGCCTATCCCGAGTGGTTCTGGCAGGTCGTCGAGTTGGAGCAGCAGGCCAGCTTC
GTCCAGGAATTCGAGACTGTCGCCATACCTGGTCTGCTACAGACGGAGGCCTACGCTCGT
GCCGTCTTCTGCACCGCCCATCCGACAGCCTCGACGCTGCGGATCGAGCAGTTCGTGACC
GCCCGGCTGGACCGGCAGCGCATCCTGGACAGACCCGATCCGCCGCACATCATGATCGCG
CTCGATGAGGCGGTGCTGCGTCGCCGCGTCGGTGGGAGCCGGACCATGAGCGAGCAGCTC
GGACACCTGCTGGCGATGGCCGACCTGCCCAAGGTGAACGTACAGGTCGTCCCGTTCAGC
GTGCGTGAGCACCCCGGGAGCATGACTCCCTTTCGCATCATGGGCTTCTGCGAGGGTCCG
GAGTTCTTGTACGGGGAGTCGTTCATCGGAGGCCAGGTGACCACCGACGTCCACCAACTC
GGGCAGCACCACCTGGCGTTCAACCTGATCCAGGCGCGTGCGCTGTCCCCGCAGGACTCG
CGCGTCCTGATCCGTCGGCTGAGGAAGGAAATGGAAGGTGGACCCGACTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro
Database:interpro:38.0
IPR001387 Helix-turn-helix type 3 (Domain)
[18-73] 8.20000406808458e-07 SM00530
SM00530   HTH_XRE
IPR010982 Lambda repressor-like, DNA-binding domain (Domain)
[21-67] 3.7e-06 G3DSA:1.10.260.40
G3DSA:1.10.260.40   G3DSA:1.10.260.40
SignalP
[1-34] 0.091 Signal
Bacteria, Gram-negative   
[1-27] 0.046 Signal
Eukaryota   
TMHMM No significant hit
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