Teicp_00480 Teicp_00480   last last

Teicp_00490 : CDS information

close this sectionLocation

Organism
StrainDSM 43866 (=NBRC 13999)
Entry nameTeicoplanin
Contig
Start / Stop / Direction87,764 / 88,726 / + [in whole cluster]
87,764 / 88,726 / + [in contig]
Location87764..88726 [in whole cluster]
87764..88726 [in contig]
TypeCDS
Length963 bp (320 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.1 general function
Productputative metal ABC transporter substrate-binding protein
Product (GenBank)manganese ABC transporter
Gene
Gene (GenBank)
EC number
Keyword
Note
  • It is supposed that this ORF is not involved in teicoplanin biosynthesis.
Note (GenBank)
  • ORF34*
Reference
ACC
PmId
[15113000] Biosynthetic gene cluster of the glycopeptide antibiotic teicoplanin: characterization of two glycosyltransferases and the key acyltransferase. (Chem Biol. , 2004)
comment
DSM 43866株teicoplanin生合成gene clusterの同定論文。

tei orf34*: Manganese ABC transporter

挿入配列とMn輸送に関与する遺伝子があったことから、clusterには下流限界が含まれていると判断している。
Family/Domain
FD
IPR006127
comment
[IPR006127] ABC transporter, metal-binding lipoprotein (Family)
Now → Zinc-uptake complex component A, periplasmic (Family)
Function; metal ion binding

close this sectionSequence

selected fasta
>putative metal ABC transporter substrate-binding protein [manganese ABC transporter]
MDRQRIFRAAATAAALTVIAGCGSGTPDEGGAAAGGAALAVVATTPEVADFVRNVGGADV
AVTQIIKPNVDPHDYEPTPADLQAIASAKVVVKSGVGLEEWLDRTIESAGFRGAVVDSSR
GVTLREGHEDEGAAGGHEGEDHDPHIWHDPRNAKIMVANIEAGLAAAEPGKAAAFQANLA
RYTAELDRLDADNEAAFARLPKDARKLVTNHDAFGYYVQRYGLEFVGSVIPSLDTSAELS
GKQLTDLVAKIKATGAKAVFAESSLPPKTAEALARQAGVEVVAGEDALFGDSLGEPGTPE
GTYLGAERHNTQVIVTALAG
selected fasta
>putative metal ABC transporter substrate-binding protein [manganese ABC transporter]
ATGGACAGGCAGCGCATCTTCCGGGCCGCGGCGACCGCGGCGGCCCTCACCGTGATCGCC
GGGTGTGGTTCCGGCACGCCGGACGAGGGCGGGGCGGCCGCCGGCGGCGCCGCCCTCGCC
GTCGTCGCCACGACGCCCGAGGTGGCGGACTTCGTCCGGAACGTCGGTGGCGCGGACGTC
GCGGTGACGCAGATCATCAAACCCAACGTCGATCCGCACGACTACGAGCCGACCCCCGCC
GACCTGCAGGCCATCGCCTCGGCGAAGGTGGTCGTCAAGAGCGGTGTCGGCCTGGAGGAG
TGGCTCGACCGCACCATCGAGTCGGCCGGCTTCCGCGGCGCGGTCGTCGACTCCAGCCGG
GGCGTGACGCTGCGCGAGGGGCACGAGGACGAGGGCGCGGCGGGGGGCCACGAGGGCGAG
GACCACGACCCGCACATCTGGCACGACCCGCGCAACGCCAAGATCATGGTGGCCAACATC
GAGGCGGGCCTGGCCGCCGCCGAGCCGGGGAAGGCGGCCGCGTTCCAGGCGAACCTGGCG
CGGTACACCGCGGAGCTGGACCGGCTCGACGCGGACAACGAGGCCGCCTTCGCCAGGCTG
CCGAAGGACGCCCGCAAGCTGGTCACCAACCACGACGCGTTCGGCTACTACGTGCAGCGT
TACGGACTGGAGTTCGTCGGCTCGGTGATCCCCAGCCTGGACACGTCGGCCGAGCTGTCC
GGCAAGCAGCTCACCGACCTGGTGGCGAAGATCAAGGCGACCGGCGCGAAGGCCGTCTTC
GCCGAGAGCTCGCTGCCGCCGAAGACCGCCGAGGCGCTCGCCCGGCAGGCCGGCGTCGAG
GTGGTCGCCGGCGAGGACGCGCTGTTCGGCGACAGCCTCGGCGAACCCGGCACGCCGGAG
GGTACCTACCTCGGCGCGGAACGGCACAACACGCAGGTCATCGTCACCGCGCTGGCCGGC
TGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro
Database:interpro:38.0
IPR006127 ABC transporter, metal-binding lipoprotein (Family)
[41-318] 3.49999999999995e-75 PF01297
PF01297   SBP_bac_9
IPR006128 Adhesion lipoprotein (Family)
[38-56] 1.20000117458134e-26 PR00690 [69-82] 1.20000117458134e-26 PR00690 [82-99] 1.20000117458134e-26 PR00690 [200-221] 1.20000117458134e-26 PR00690 [255-273] 1.20000117458134e-26 PR00690 [284-303] 1.20000117458134e-26 PR00690
PR00690   ADHESNFAMILY
IPR006129 Adhesin B (Family)
[38-59] 4.40000933643892e-19 PR00691 [63-81] 4.40000933643892e-19 PR00691 [82-101] 4.40000933643892e-19 PR00691 [142-161] 4.40000933643892e-19 PR00691 [200-217] 4.40000933643892e-19 PR00691 [251-268] 4.40000933643892e-19 PR00691
PR00691   ADHESINB
SignalP
[1-25] 0.5 Signal
Eukaryota   
TMHMM No significant hit
Teicp_00480 Teicp_00480   last last
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