| accession | DB | alignment | Evalue | Score | Ident. | link | information | pubmed |
1
|
Q8RR22_STRVG (Q8RR22) |
|
|
1e-165 |
586 |
100% |
|
- Product
- Lysine cyclodeaminase
- Gene
- visC
- Organism
- Streptomyces virginiae
|
1uniprot[Pubmed] 11943483 [Medline] 21940635 Characterization of virginiamycin S biosynthetic genes from Streptomyces virginiae.(Gene) [2002] |
|
2
|
D9UBW0_STRPR (D9UBW0) |
|
|
1e-106 |
390 |
70% |
|
- Product
- Lysine cyclodeaminase
- Gene
- pipA
- Organism
- Streptomyces pristinaespiralis
|
1uniprot[Pubmed] 21342465 Characterization of the 'pristinamycin supercluster' of Streptomyces pristinaespiralis.(Microb Biotechnol) [2011] |
|
4
|
A3KFH0_9ACTO (A3KFH0) |
|
|
6e-84 |
315 |
59% |
|
- Product
- Lysine cyclodeaminase
- Gene
- pip
- Organism
- Actinoplanes friuliensis
|
1uniprot An acyl-CoA dehydrogenase is involved in the formation of the cis3 doublebond in the acyl residue of the lipopeptide antibiotic friulimicin inActinoplanes friuliensis.(Microbiology (Mosc.)) [2005] |
|
6
|
E9KTI0_9ACTO (E9KTI0) |
|
|
6e-79 |
298 |
55% |
|
- Product
- Lysine cyclodeaminase
- Gene
- fkbL
Tcs_11604BP_026
- Organism
- Streptomyces sp. KCTC 11604BP
|
1uniprot[Pubmed] 21175203 Biosynthesis of the allylmalonyl-CoA extender unit for the FK506 polyketide synthase proceeds through a dedicated polyketide synthase and facilitates the mutasynthesis of analogues.(J. Am. Chem. Soc.) [2011] |
|
7
|
Q9KIE2_STRHY (Q9KIE2) |
|
|
6e-79 |
298 |
56% |
|
- Product
- FkbL
- Gene
- fkbL
- Organism
- Streptomyces hygroscopicus subsp. ascomyceticus
|
1uniprot[Pubmed] 10863099 [Medline] 20323220 The FK520 gene cluster of Streptomyces hygroscopicus var. ascomyceticus (ATCC 14891) contains genes for biosynthesis of unusual polyketide extender units.(Gene) [2000] |
|
8
|
E9KTB3_STRKN (E9KTB3) |
|
|
1e-77 |
294 |
55% |
|
- Product
- Lysine cyclodeaminase
- Gene
- fkbL
Tcs_SK_029
- Organism
- Streptomyces kanamyceticus
|
1uniprot[Pubmed] 21175203 Biosynthesis of the allylmalonyl-CoA extender unit for the FK506 polyketide synthase proceeds through a dedicated polyketide synthase and facilitates the mutasynthesis of analogues.(J. Am. Chem. Soc.) [2011] |
|
9
|
E2D2Q1_9BACT (E2D2Q1) |
|
|
7e-76 |
288 |
59% |
|
- Product
- Lysine cyclodeaminase
- Gene
-
- Organism
- uncultured soil bacterium
|
1uniprot[Pubmed] 20577994 Cloning large natural product gene clusters from the environment: piecing environmental DNA gene clusters back together with TAR.(Biopolymers) [2010] |
|
10
|
D7P6A2_9DELT (D7P6A2) |
|
|
3e-72 |
276 |
52% |
|
- Product
- TubZ
- Gene
- tubZ
- Organism
- Cystobacter sp. SBCb004
|
1uniprot[Pubmed] 20338521 Discovery of 23 natural tubulysins from Angiococcus disciformis An d48 and Cystobacter SBCb004.(Chem. Biol.) [2010] |
|
11
|
Q5ZPB2_9DELT (Q5ZPB2) |
|
|
1e-70 |
271 |
52% |
|
- Product
- TubZ protein
- Gene
- tubZ
- Organism
- Angiococcus disciformis
|
1uniprot[Pubmed] 15324808 Identification and analysis of the core biosynthetic machinery of tubulysin, a potent cytotoxin with potential anticancer activity.(Chem. Biol.) [2004] |
|
13
|
A3HT14_9BACT (A3HT14) |
|
|
5e-67 |
259 |
45% |
|
- Product
- Putative ornithine cyclodeaminase
- Gene
- ALPR1_12215
- Organism
- Algoriphagus sp. PR1
|
1uniprot[Pubmed] 21183675 Complete Genome Sequence of Algoriphagus sp. PR1, Bacterial Prey of a Colony-Forming Choanoflagellate.(J. Bacteriol.) [2011] |
|
14
|
Q54304_STRHY (Q54304) |
|
|
2e-66 |
257 |
53% |
|
- Product
- Lysine cyclodeaminase
- Gene
- rapL
- Organism
- Streptomyces hygroscopicus
|
1uniprot[Pubmed] 7644502 [Medline] 95372374 The biosynthetic gene cluster for the polyketide immunosuppressant rapamycin.(Proc. Natl. Acad. Sci. U.S.A.) [1995] | 2uniprot[Pubmed] 8635730 [Medline] 96186895 Organisation of the biosynthetic gene cluster for rapamycin in Streptomyces hygroscopicus: analysis of genes flanking the polyketide synthase.(Gene) [1996] | 3uniprot[Pubmed] 8635756 [Medline] 96186896 Organization of the biosynthetic gene cluster for rapamycin in Streptomyces hygroscopicus: analysis of the enzymatic domains in the modular polyketide synthase.(Gene) [1996] | [pubmed all]
|
19
|
E0WFL8_9ACTO (E0WFL8) |
|
|
3e-58 |
230 |
46% |
|
- Product
- Cyclodeaminase
- Gene
- getD
- Organism
- Streptomyces sp. L-49973
|
1uniprot Insights into an Unusual Nonribosomal Peptide Synthetase Biosynthesis IDENTIFICATION AND CHARACTERIZATION OF THE GE81112 BIOSYNTHETIC GENE CLUSTER.(J. Biol. Chem.) [2010] |
|
23
|
E0SNY7_IGNAA (E0SNY7) |
|
|
1e-26 |
124 |
35% |
|
- Product
- L-alanine dehydrogenase
- Gene
- Igag_1121
- Organism
- Ignisphaera aggregans (strain DSM 17230 / JCM 13409 / AQ1.S1)
|
1uniprot Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1).(Stand. Genomic Sci.) [2010] |
|
24
|
Q18KD7_HALWD (Q18KD7) |
|
|
1e-26 |
124 |
35% |
|
- Product
- Ornithine cyclodeaminase
- Gene
- ocd
HQ1386A
- Organism
- Haloquadratum walsbyi (strain DSM 16790)
|
1uniprot[Pubmed] 16820047 The genome of the square archaeon Haloquadratum walsbyi: life at the limits of water activity.(BMC Genomics) [2006] |
|
26
|
A1RWN8_THEPD (A1RWN8) |
|
|
4e-26 |
123 |
33% |
|
- Product
- L-alanine dehydrogenase
- Gene
- Tpen_0208
- Organism
- Thermofilum pendens (strain Hrk 5)
|
1uniprot[Pubmed] 18263724 Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction.(J. Bacteriol.) [2008] |
|
27
|
F4BYQ1_METCG (F4BYQ1) |
|
|
7e-26 |
122 |
40% |
|
- Product
- Alanine dehydrogenase
- Gene
- ala
MCON_0907
- Organism
- Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6)
Methanothrix concilii
|
1uniprot[Pubmed] 21571998 Complete genome sequence of Methanosaeta concilii, a specialist in aceticlastic methanogenesis.(J. Bacteriol.) [2011] |
|
28
|
D2RES0_ARCPA (D2RES0) |
|
|
8e-26 |
122 |
34% |
|
- Product
- Alanine dehydrogenase
- Gene
- Arcpr_1568
- Organism
- Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18)
|
1uniprot Complete genome sequence of Archaeoglobus profundus type strain (AV18).(Stand. Genomic Sci.) [2010] |
|
35
|
C3KLW3_RHISN (C3KLW3) |
|
|
6e-25 |
119 |
39% |
|
- Product
- Ornithine cyclodeaminase 2
- Gene
- ocd3
NGR_b19520
- Organism
- Rhizobium sp. (strain NGR234)
|
1uniprot[Pubmed] 14702322 An evolutionary hot spot: the pNGR234b replicon of Rhizobium sp. strain NGR234.(J. Bacteriol.) [2004] | 2uniprot[Pubmed] 19376903 Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems.(Appl. Environ. Microbiol.) [2009] | [pubmed all]
|
38
|
E8L1V7_9RHIZ (E8L1V7) |
|
|
2e-24 |
117 |
35% |
|
- Product
- Ornithine cyclodeaminase
- Gene
- Met49242DRAFT_1523
- Organism
- Methylocystis sp. ATCC 49242
|
1uniprot[Pubmed] 21441518 Genome Sequence of the Methanotrophic Alphaproteobacterium Methylocystis sp. Strain Rockwell (ATCC 49242).(J. Bacteriol.) [2011] |
|
42
|
D2RRQ5_HALTV (D2RRQ5) |
|
|
3e-24 |
117 |
34% |
|
- Product
- Ornithine cyclodeaminase
- Gene
- Htur_3660
- Organism
- Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734)
Halococcus turkmenicus
|
1uniprot[Pubmed] 21304683 Complete genome sequence of Haloterrigena turkmenica type strain (4k).(Stand. Genomic Sci.) [2009] |
|
48
|
C7P199_HALMD (C7P199) |
|
|
9e-24 |
115 |
33% |
|
- Product
- Ornithine cyclodeaminase
- Gene
- Hmuk_0978
- Organism
- Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541)
Haloarcula mukohataei
|
1uniprot Complete genome sequence of Halomicrobium mukohataei type strain (arg-2).(Stand. Genomic Sci.) [2009] |
|
50
|
Q2K8M6_RHIEC (Q2K8M6) |
|
|
3e-23 |
114 |
33% |
|
- Product
- Ornithine cyclodeaminase protein
- Gene
- ocdch2
RHE_CH02026
- Organism
- Rhizobium etli (strain CFN 42 / ATCC 51251)
|
1uniprot[Pubmed] 16505379 The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons.(Proc. Natl. Acad. Sci. U.S.A.) [2006] |
|
52
|
O28608_ARCFU (O28608) |
|
|
3e-23 |
113 |
33% |
|
- Product
- Ornithine cyclodeaminase (ArcB)
- Gene
- AF_1665
- Organism
- Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
|
1uniprot[Pubmed] 9389475 [Medline] 98049343 The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus.(Nature) [1997] | 2uniprot[Pubmed] 15313611 Structure of alanine dehydrogenase from Archaeoglobus: active site analysis and relation to bacterial cyclodeaminases and mammalian mu crystallin.(J. Mol. Biol.) [2004] | [pubmed all]
|
57
|
Q5V5B6_HALMA (Q5V5B6) |
|
|
4e-23 |
113 |
35% |
|
- Product
- Ornithine cyclodeaminase
- Gene
- ocd3
rrnAC0227
- Organism
- Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
Halobacterium marismortui
|
1uniprot[Pubmed] 15520287 Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea.(Genome Res.) [2004] |
|
58
|
E4NTY0_HALBP (E4NTY0) |
|
|
5e-23 |
112 |
33% |
|
- Product
- L-alanine dehydrogenase
- Gene
- Hbor_27410
- Organism
- Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3)
|
1uniprot[Pubmed] 21304651 Complete genome sequence of Halogeometricum borinquense type strain (PR3).(Stand. Genomic Sci.) [2009] |
|
59
|
Q8TKZ1_METAC (Q8TKZ1) |
|
|
5e-23 |
112 |
36% |
|
- Product
- Ornithine cyclodeaminase
- Gene
- ocd
MA_3252
- Organism
- Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
|
1uniprot[Pubmed] 11932238 [Medline] 21929760 The genome of Methanosarcina acetivorans reveals extensive metabolic and physiological diversity.(Genome Res.) [2002] |
|
62
|
Q8Q0N9_METMA (Q8Q0N9) |
|
|
7e-23 |
112 |
35% |
|
- Product
- Ornithine cyclodeaminase
- Gene
- MM_0097
- Organism
- Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Methanosarcina frisia
|
1uniprot[Pubmed] 12125824 [Medline] 22120827 The genome of Methanosarcina mazei: evidence for lateral gene transfer between Bacteria and Archaea.(J. Mol. Microbiol. Biotechnol.) [2002] |
|
68
|
D4GRZ5_HALVD (D4GRZ5) |
|
|
2e-22 |
110 |
33% |
|
- Product
- Ornithine cyclodeaminase
- Gene
- ocd1
HVO_0454
- Organism
- Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
Halobacterium volcanii
|
1uniprot[Pubmed] 20333302 The complete genome sequence of Haloferax volcanii DS2, a model archaeon.(PLoS ONE) [2010] |
|
69
|
D8J3U1_HALJB (D8J3U1) |
|
|
2e-22 |
110 |
34% |
|
- Product
- Ornithine cyclodeaminase
- Gene
- HacjB3_00195
- Organism
- Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3)
|
1uniprot[Pubmed] 20601480 Complete genome sequence of Halalkalicoccus jeotgali B3(T), an extremely halophilic archaeon.(J. Bacteriol.) [2010] |
|
74
|
D2BG63_DEHSV (D2BG63) |
|
|
2e-22 |
110 |
34% |
|
- Product
- Ornithine cyclodeaminase
- Gene
- arcB
DhcVS_140
- Organism
- Dehalococcoides sp. (strain VS)
|
1uniprot[Pubmed] 19893622 Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides.(PLoS Genet.) [2009] |
|
76
|
Q466W6_METBF (Q466W6) |
|
|
3e-22 |
110 |
35% |
|
- Product
- L-alanine dehydrogenase
- Gene
- Mbar_A3192
- Organism
- Methanosarcina barkeri (strain Fusaro / DSM 804)
|
1uniprot[Pubmed] 16980466 The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes.(J. Bacteriol.) [2006] |
|
84
|
Q4FRW9_PSYA2 (Q4FRW9) |
|
|
6e-22 |
109 |
35% |
|
- Product
- Ornithine cyclodeaminase
- Gene
- ocd
Psyc_1391
- Organism
- Psychrobacter arcticus (strain DSM 17307 / 273-4)
|
1uniprot[Pubmed] 20154119 The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth.(Appl. Environ. Microbiol.) [2010] |
|
93
|
Q9R693_RHIRD (Q9R693) |
|
|
8e-22 |
108 |
36% |
|
- Product
- Tiorf188 protein
- Gene
- tiorf188
- Organism
- Rhizobium radiobacter
Agrobacterium tumefaciens Agrobacterium radiobacter
|
1uniprot Genome structure of pTi-SAKURA(I): Strategy for DNA sequencing of a Japanese cherry-Ti plasmid.(Nucleic Acids Symp. Ser.) [1998] | 2uniprot Genome structure of pTi-SAKURA (III): Characteristics of T-DNA.(Nucleic Acids Symp. Ser.) [1998] | 3uniprot Genome structure of pTi-SAKURA (IV): Characteristics of tra region.(Nucleic Acids Symp. Ser.) [1998] | 4uniprot Genome structure of pTi-SAKURA (V): Complete nucleotide sequence of plasmid pTi-SAKURA's vir region in Agrobacterium tumefaciens.(Nucleic Acids Symp. Ser.) [1998] | 5uniprot[Pubmed] 10721727 [Medline] 20184752 Complete nucleotide sequence of a plant tumor-inducing Ti plasmid.(Gene) [2000] | 6uniprot[Pubmed] 9524202 [Medline] 98193120 Novel structural difference between nopaline- and octopine-type trbJ genes: construction of genetic and physical map and sequencing of trb/traI and rep gene clusters of a new Ti plasmid pTi-SAKURA.(Biochim. Biophys. Acta) [1998] | [pubmed all]
|
94
|
OCD_AGRT5 (P09773) |
|
|
8e-22 |
108 |
36% |
|
- Product
- Ornithine cyclodeaminase
- Gene
- arcB
ocd Atu6016 AGR_pTi_54
- Organism
- Agrobacterium tumefaciens (strain C58 / ATCC 33970)
|
1uniprot[Pubmed] 3281832 [Medline] 88185308 Ornithine cyclodeaminase from Ti plasmid C58: DNA sequence, enzyme properties and regulation of activity by arginine.(Eur. J. Biochem.) [1988] | 2uniprot[Pubmed] 8045881 [Medline] 94321320 Octopine and nopaline oxidases from Ti plasmids of Agrobacterium tumefaciens: molecular analysis, relationship, and functional characterization.(J. Bacteriol.) [1994] | 3uniprot[Pubmed] 11743193 [Medline] 21608550 The genome of the natural genetic engineer Agrobacterium tumefaciens C58.(Science) [2001] | 4uniprot[Pubmed] 11743194 [Medline] 21608551 Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58.(Science) [2001] | [pubmed all]
|
98
|
C6A254_THESM (C6A254) |
|
|
1e-21 |
108 |
31% |
|
- Product
- Ornithine cyclodeaminase
- Gene
- TSIB_0634
- Organism
- Thermococcus sibiricus (strain MM 739 / DSM 12597)
|
1uniprot[Pubmed] 19447963 Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a siberian oil reservoir, as revealed by genome analysis.(Appl. Environ. Microbiol.) [2009] |
|
100
|
B9JMI2_AGRRK (B9JMI2) |
|
|
1e-21 |
108 |
32% |
|
- Product
- Ornithine cyclodeaminase protein
- Gene
- ocdch2
Arad_10025
- Organism
- Agrobacterium radiobacter (strain K84 / ATCC BAA-868)
|
1uniprot[Pubmed] 19251847 Genome sequences of three Agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria.(J. Bacteriol.) [2009] |
|