Epoth_00030 Epoth_00030   Epoth_00050 Epoth_00050

Epoth_00040 : CDS information

close this sectionLocation

Organism
StrainSo ce90
Entry nameEpothilone
Contig
Start / Stop / Direction5,992 / 5,612 / - [in whole cluster]
5,992 / 5,612 / - [in contig]
Locationcomplement(5612..5992) [in whole cluster]
complement(5612..5992) [in contig]
TypeCDS
Length381 bp (126 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)unknown
Gene
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
  • ORF4
Reference
ACC
PmId
[10662695] The biosynthetic gene cluster for the microtubule-stabilizing agents epothilones A and B from Sorangium cellulosum So ce90. (Chem Biol. , 2000)
comment
Table 1: deduced function
Orf4(126aa) None

close this sectionSequence

selected fasta
>hypothetical protein [unknown]
MDKPIGRTRCAIAEGYIPGGSNGPEPQMTSHETACLLNASDRDAQVAITVYFSDRDPAGP
YRVTVPARRTRHVRFNDLTEPEPIPRDTDYASVIESDAPIVVQHTRLDSRQAENALLSTI
AYTDRE
selected fasta
>hypothetical protein [unknown]
ATGGACAAGCCGATCGGGCGGACGCGCTGTGCAATCGCAGAGGGCTACATCCCAGGCGGG
AGCAACGGACCTGAGCCGCAGATGACGAGCCATGAGACGGCCTGCCTGTTGAATGCGTCG
GACCGGGACGCGCAGGTCGCCATCACCGTTTACTTCAGCGACCGCGACCCCGCCGGGCCT
TACCGGGTGACCGTTCCAGCGAGGCGCACCCGGCACGTCCGGTTCAACGATCTGACCGAA
CCCGAGCCGATCCCGCGCGATACGGACTATGCCAGCGTGATCGAATCGGACGCCCCCATC
GTCGTGCAGCATACCCGGCTCGACTCGCGTCAGGCGGAGAACGCGCTGCTCAGCACGATC
GCCTACACGGACCGGGAGTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro
Database:interpro:38.0
IPR009794 Protein of unknown function DUF1362 (Family)
[1-126] 4.89996723796399e-89 PIRSF008711
PIRSF008711   UCP008711
[2-125] 3.60000000000002e-59 G3DSA:2.60.290.11
G3DSA:2.60.290.11   DUF1362
[3-126] 1.40000506907309e-52 SSF89232
SSF89232   DUF1362
[5-123] 9.60000000000003e-56 PF07100
PF07100   ASRT
SignalP No significant hit
TMHMM No significant hit
Epoth_00030 Epoth_00030   Epoth_00050 Epoth_00050
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