Teicp2_00060 Teicp2_00060   Teicp2_00080 Teicp2_00080

Teicp2_00070 : CDS information

close this sectionLocation

Organism
StrainATCC 31121 (=NBRC 13999)
Entry nameTeicoplanin
Contig
Start / Stop / Direction8,123 / 7,158 / - [in whole cluster]
8,123 / 7,158 / - [in contig]
Locationcomplement(7158..8123) [in whole cluster]
complement(7158..8123) [in contig]
TypeCDS
Length966 bp (321 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category4.1 transcriptional regulator
Productputative AraC family transcriptional regulator
Product (GenBank)putative AraC-family transcription regulator
Gene
Gene (GenBank)tei7
EC number
Keyword
Note
Note (GenBank)
Reference
ACC
comment
ATCC 31121株teicoplanin生合成gene cluster報告論文[PMID: 14702401]には、このORFについての記載なし。
Related Reference
ACC
Q6ZZK7
NITE
Teicp_00010
PmId
[15113000] Biosynthetic gene cluster of the glycopeptide antibiotic teicoplanin: characterization of two glycosyltransferases and the key acyltransferase. (Chem Biol. , 2004)
comment
配列は当ORFと完全一致。
UniProt同一entry.

---
DSM 43866株teicoplanin生合成gene clusterの同定論文。

tei orf11: Transcriptional regulator

orfs 10 and 11は知られたregulatorsに高い類似性を示す。これらはclusterの端にあり、他のグリコペプチド生合成clustersにhomologsがない。
ACC
Q9S166
PmId
comment
BLAST id43%
Streptomyces griseus_adpA
AdpA

A-factor-responsive transcriptional activator (AdpA)の特徴づけ。

実験報告は他にもたくさんある。
ACC
B6V2A5
PmId
comment
BLAST id43%
Streptomyces lividans
AdpA

AdpAによって調節される遺伝子の同定。
Family/Domain
FD
IPR018060
comment
[IPR018060] DNA binding HTH domain, AraC-type (Domain)
function; transcription factor activity, sequence-specific DNA binding

close this sectionSequence

selected fasta
>putative AraC family transcriptional regulator [putative AraC-family transcription regulator]
MVPRRVALIVDEHSNPFEVGCACEIFGGRRRPQIGYELYELTVVSPTRSVPMRDRLFRVS
APGRLSDLDRADMIIVPNRPDVDVPSRGAVLAAIRRAHARGARLVGLCTGAFTLAEAGVL
DGRRAAVHWQLAPDFHRRFPAVRLEPDVLFVDDGDILTSAGSAAALDLGLHIVRRDHGTE
VANRVGRQLVFAAFRDGGQRQFVERPLPAPATSPLAPVLQWAQERLHLRLSVDDLARHGR
MSTATLHRRFRNEVGSTPLAWLTAQRVALACRLIEQGAAGVDAVARQSGLGTAANLRALL
RKHVGLSPSEYRRRFAADGAR
selected fasta
>putative AraC family transcriptional regulator [putative AraC-family transcription regulator]
ATGGTGCCGCGGCGGGTCGCGCTGATAGTCGACGAACATTCCAACCCGTTCGAGGTGGGC
TGTGCCTGCGAGATCTTCGGCGGCCGCCGGCGCCCACAGATCGGCTACGAGCTGTACGAA
CTCACCGTCGTCAGCCCGACCAGATCGGTACCGATGCGGGACCGGCTGTTCCGCGTCAGC
GCGCCCGGGCGGCTGAGCGACCTGGACCGGGCCGACATGATCATCGTGCCGAACCGGCCG
GATGTCGACGTCCCGTCCCGCGGCGCGGTCCTGGCGGCGATCCGGCGGGCCCACGCGCGG
GGCGCCCGCCTGGTCGGCCTCTGCACCGGCGCCTTCACGCTCGCCGAGGCGGGGGTGCTC
GACGGCCGCCGCGCGGCGGTGCACTGGCAGCTGGCTCCGGACTTCCACCGGCGCTTCCCG
GCCGTACGGCTGGAGCCGGACGTGCTGTTCGTCGATGACGGCGACATCCTGACCTCGGCG
GGCAGCGCGGCGGCGCTCGACCTCGGCCTGCACATCGTCCGCCGCGACCACGGCACCGAG
GTGGCCAACCGGGTCGGCCGGCAGCTGGTGTTCGCCGCGTTCCGCGACGGCGGCCAGCGG
CAGTTCGTCGAACGCCCGCTGCCGGCGCCGGCGACGAGCCCGCTCGCGCCGGTCCTGCAG
TGGGCGCAGGAGCGCCTGCACCTGCGGCTGTCGGTCGACGACCTGGCCCGGCACGGCCGG
ATGAGCACCGCCACGCTGCACCGGCGCTTCCGCAACGAGGTGGGCAGCACCCCGCTGGCG
TGGCTGACCGCGCAGCGCGTCGCGCTGGCGTGCCGCCTGATCGAGCAGGGCGCCGCGGGC
GTGGACGCCGTGGCCCGGCAGTCCGGTCTGGGCACCGCCGCCAACCTGCGCGCCCTGCTG
CGTAAGCACGTGGGCCTGAGCCCGTCGGAGTACCGCCGGCGCTTCGCCGCCGACGGCGCG
CGGTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro
Database:interpro:38.0
IPR009057 Homeodomain-like (Domain)
[211-262] 4.99999811956429e-08 SSF46689 [265-315] 4.99999811956429e-08 SSF46689
SSF46689   Homeodomain_like
[219-265] 2.7e-17 G3DSA:1.10.10.60 [266-315] 1.2e-09 G3DSA:1.10.10.60
G3DSA:1.10.10.60   Homeodomain-rel
IPR018060 DNA binding HTH domain, AraC-type (Domain)
[216-314] PS01124
PS01124   HTH_ARAC_FAMILY_2
[229-312] 1.39999892049878e-22 SM00342
SM00342   HTH_ARAC
IPR025628 DJ-1 domain, InhA-type (Domain)
[37-174] 2.3e-31 PF13278
PF13278   DUF4066
SignalP No significant hit
TMHMM No significant hit
Teicp2_00060 Teicp2_00060   Teicp2_00080 Teicp2_00080
Page top