Teicp2_00070 Teicp2_00070   Teicp2_00090 Teicp2_00090

Teicp2_00080 : CDS information

close this sectionLocation

Organism
StrainATCC 31121 (=NBRC 13999)
Entry nameTeicoplanin
Contig
Start / Stop / Direction9,179 / 8,427 / - [in whole cluster]
9,179 / 8,427 / - [in contig]
Locationcomplement(8427..9179) [in whole cluster]
complement(8427..9179) [in contig]
TypeCDS
Length753 bp (250 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category4.1 transcriptional regulator
Productputative TetR family transcriptional regulator
Product (GenBank)putative TetR-family transcitpional regulator
Gene
Gene (GenBank)tei8
EC number
Keyword
Note
Note (GenBank)
Reference
ACC
comment
ATCC 31121株teicoplanin生合成gene cluster報告論文[PMID: 14702401]には、このORFについての記載なし。
Related Reference
ACC
Q6ZZK6
NITE
Teicp_00020
PmId
[15113000] Biosynthetic gene cluster of the glycopeptide antibiotic teicoplanin: characterization of two glycosyltransferases and the key acyltransferase. (Chem Biol. , 2004)
comment
配列は当ORFと完全一致。
UniProt同一entry.

---
DSM 43866株teicoplanin生合成gene clusterの同定論文。

tei orf10: Transcriptional regulator

orfs 10 and 11は知られたregulatorsに高い類似性を示す。これらはclusterの端にあり、他のグリコペプチド生合成clustersにhomologsがない。
Family/Domain
FD
IPR001647
comment
[IPR001647] DNA-binding HTH domain, TetR-type (Domain)

close this sectionSequence

selected fasta
>putative TetR family transcriptional regulator [putative TetR-family transcitpional regulator]
MSATQEPGTSSRRRGGAGPVDDATVRAALIQAAERQLTASPDGDIATRAVSEEAGVTQPV
LYRLFGDKRGLLDAVADAGFDRYARRKSELEVTDNPVGDLYAGWDDHMAFATENPALYQL
MFAPRPRSGATTYRRILTLLEATLLRCAAAGALTTTPRAAAQLILSANIGVALGRIAAPE
LFDDPALSHRARDAAFATVLTHPATPSGPDPLRDAARQLRSQLSLSGTDRLEPAETVLLD
RWLERIDQPE
selected fasta
>putative TetR family transcriptional regulator [putative TetR-family transcitpional regulator]
ATGAGTGCTACGCAGGAGCCCGGCACGTCCTCCCGGCGGCGTGGCGGTGCGGGGCCCGTC
GACGACGCCACCGTCCGCGCCGCCCTGATCCAGGCCGCCGAGCGGCAGCTGACCGCCTCC
CCGGACGGCGACATCGCCACCCGCGCCGTCAGCGAGGAGGCCGGCGTCACCCAGCCGGTG
CTGTACCGGCTGTTCGGTGACAAACGCGGCCTGCTGGACGCCGTCGCCGACGCCGGATTC
GACCGCTACGCCCGGCGCAAGAGCGAACTGGAGGTCACCGACAACCCGGTCGGCGACCTG
TACGCGGGATGGGACGACCACATGGCGTTCGCCACCGAGAACCCGGCCCTCTACCAGCTG
ATGTTCGCGCCCCGGCCGCGTTCGGGCGCGACCACCTACCGCCGCATCCTGACACTGCTC
GAGGCCACCCTCCTGCGCTGCGCCGCCGCCGGCGCGCTCACCACGACGCCCCGGGCAGCC
GCCCAGCTGATCCTGAGCGCCAACATCGGCGTCGCTCTCGGCCGCATCGCCGCGCCGGAG
CTCTTCGACGACCCGGCGCTGTCGCACCGCGCCCGCGACGCCGCCTTCGCCACCGTGCTC
ACCCACCCCGCCACGCCGAGCGGGCCGGACCCGCTCCGCGACGCCGCCCGCCAGCTGCGC
TCGCAGCTCTCGCTCAGCGGCACCGACCGGCTGGAACCGGCCGAGACCGTGCTGCTCGAC
CGGTGGCTGGAGCGCATCGACCAGCCGGAGTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro
Database:interpro:38.0
IPR001647 DNA-binding HTH domain, TetR-type (Domain)
[23-83] PS50977
PS50977   HTH_TETR_2
[29-75] 1.6e-07 PF00440
PF00440   TetR_N
IPR009057 Homeodomain-like (Domain)
[21-99] 3.00000067992871e-11 SSF46689
SSF46689   Homeodomain_like
IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal (Domain)
[95-202] 3.69999844802221e-06 SSF48498
SSF48498   TetR_like_C
IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal (Domain)
[23-214] 3.60000000000001e-25 G3DSA:1.10.357.10
G3DSA:1.10.357.10   TetR_C
IPR025996 WHG domain (Domain)
[107-172] 5.3e-07 PF13305
PF13305   WHG
SignalP No significant hit
TMHMM No significant hit
Teicp2_00070 Teicp2_00070   Teicp2_00090 Teicp2_00090
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