A4793_00160 A4793_00160   A4793_00180 A4793_00180

A4793_00170 : CDS information

close this sectionLocation

Organism
StrainNRRL 15009
Entry nameA47934
Contig
Start / Stop / Direction45,985 / 45,521 / - [in whole cluster]
45,985 / 45,521 / - [in contig]
Locationcomplement(45521..45985) [in whole cluster]
complement(45521..45985) [in contig]
TypeCDS
Length465 bp (154 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category4.1 transcriptional regulator
Productputative Rrf2 family transcriptional regulator
Product (GenBank)StaS
GenestaS
ORF17
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
  • putative DNA binding protein
Reference
ACC
PmId
[12060705] Assembling the glycopeptide antibiotic scaffold: The biosynthesis of A47934 from Streptomyces toyocaensis NRRL15009. (Proc Natl Acad Sci U S A. , 2002)
comment
Streptomyces toyocaensis NRRL15009由来A47934生合成gene clusterの同定論文。

34のORFsからなるclusterは、A47934の生合成とその調節に必要だと予測される遺伝子をすべて含む。グリコペプチド耐性を担う酵素をコードするORFsも含む。

StaS: Putative DNA binding protein

配列解析のみ。staSはA47934 clusterに特有な機能不明タンパクをコードする。
Related Reference
ACC
O34527
PmId
[18974048] ( , )
comment
BLAST id34%
Bacillus subtilis_cymR
HTH-type transcriptional regulator CymR (Cysteine metabolism repressor)
Family/Domain
FD
IPR000944
comment
[IPR000944] Transcription regulator Rrf2-type (Family)

close this sectionSequence

selected fasta
>putative Rrf2 family transcriptional regulator [StaS]
MRITARTDYAVRAMAELAAEGETPLTAEELSARQDIPVRFLFGILRELRLARLVHSVRGP
QGGYLLASAAEEITLAAVIRAVDGPLASVRELSLTGLEYPGPAAVLPDVWRAVRTSLRQV
LETTTLADLARGELPEIVRSRAEEYRTGVRDHEQ
selected fasta
>putative Rrf2 family transcriptional regulator [StaS]
ATGCGGATCACGGCACGGACGGACTACGCGGTGCGGGCGATGGCGGAGCTGGCAGCCGAG
GGTGAGACCCCCTTGACCGCCGAGGAGCTGTCCGCCCGCCAGGACATCCCGGTGCGGTTC
CTCTTCGGCATCCTGAGGGAGCTGCGCCTGGCCCGTCTGGTGCACAGCGTGCGTGGTCCC
CAGGGCGGATACCTGCTGGCCTCCGCCGCGGAGGAGATCACTCTGGCGGCCGTGATCCGC
GCGGTGGACGGCCCGCTGGCCAGCGTGCGGGAGCTCAGCCTGACGGGCCTCGAGTACCCG
GGGCCGGCCGCCGTTCTCCCCGACGTGTGGCGGGCGGTGCGTACCAGTCTGCGCCAGGTG
CTGGAGACCACCACGCTTGCCGACCTCGCCCGTGGCGAGCTGCCGGAGATCGTGCGGTCC
CGGGCCGAGGAGTACCGCACCGGCGTTCGCGATCACGAGCAGTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro
Database:interpro:38.0
IPR000944 Transcription regulator Rrf2-like (Family)
[2-131] PS51197
PS51197   HTH_RRF2_2
[1-82] 7.79999999999999e-26 PF02082
PF02082   Rrf2
[48-66] PS01332
PS01332   HTH_RRF2_1
[1-130] 1.09999999999999e-35 TIGR00738
TIGR00738   Rrf2_super
SignalP No significant hit
TMHMM No significant hit
A4793_00160 A4793_00160   A4793_00180 A4793_00180
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