Lydi_00200 : CDS information
Location
Organism | Streptomyces sp. |
---|---|
Strain | TP-A0598 (=NBRC 110027) |
Entry name | Lydicamycin |
Contig | BBNO01000003part |
Start / Stop / Direction | 103,446 / 109,217 / + [in whole cluster] 103,446 / 109,217 / + [in contig] |
Location | 103446..109217 [in whole cluster] 103446..109217 [in contig] |
Type | CDS |
Length | 5,772 bp (1,923 aa) |
Annotation
Category | 1.1 PKS |
---|---|
Product | polyketide synthase |
Product (GenBank) | polyketide synthase |
Gene | TPA0598_03_00840 |
Gene (GenBank) | |
EC number | |
Keyword | |
Note | |
Note (GenBank) | |
Reference |
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PKS/NRPS Module
0 | ||
1 | malonyl-CoA |
Sequence
>polyketide synthase [polyketide synthase] MNALDENPSLIQKLHGLSRPEQDRALLDLVCHHALGALRRVRPDDAPRTLAPDRPFTDLG FDSLTAADLHVRLVAATGLPLPVTVAFDHPTPVRLARQLRAGLLGADGGDGTETTSEPPR QAAAADDADPIAIVGIGCRYPGGIGSPEQLWRLVAEGGEVITGLPEDRGWDPETLYDPDP DAPGKTYVRRGGFLHDAADFDAEFFGIGPREAQAMDPQQRLVLETSWEALERAGIDPTAL RGSRAGVFLGAEPQEYGPRLTRAGGLEGYLSTGNTTSVIAGRVAYALGLEGPTMTVDTAC SGSLVALHLACQALRQGECSVALAGGVAVMAAPGTFLSFSRQRGLAPDGRCKAFSADADG TGWSEGVGVLVVERLSDARRAGHPVLALVRGSAVNSDGASNGLTAPNGPSQQRVIRQALD AAGLDPHQVDAVEAHGTGTKLGDPIEAQSLIAAYGTGRTEPLWLGSVKSNLGHTQAAAGA AGIIKMIMAMRQELLPRTLHVTEPTPHVDWAQGKAALLTEARPWPRTDRPRRAGISSFGF SGTNAHIILEQAPPAPAPPPATAHPPVLALPVSARTPDALRAQAARLKSFLDEHPGPALT DVGRALGTTRAQLEHRAVLVAADREELTRDLDALAAGAPGPGVRQGQAGSGAVAVLFTGQ GAQRLGMGRELYAAHPVFARAWDEICAELDVHLPGPLRAVVWAEPGSPEAALLDETVYAQ SALFALETALFRLLESWGLRPDFLLGHSLGEVTAAYVAGVWSLPDAAALVAARGRLMQEL PAGGAMVSVRATEEEVTAELGRFEGRVGLAAVNGPASVVLSGDEDAVTEIAATLAARGHK TQRLRVSHAFHSPRMQPMLDSFRWVTRVMSYKPPKIPVVSNLTGRIATGEELCAPDYWVD HVRGAVRFADGIRALADHGVRTFLEVGPDAVLSAMAPDCVPGEDRPVFLPTLRRDRAETR EATGALAAAWAHGAEVDWAAFHGGSGHPVDLPTYAFQRRRFWLDAGDQEPDAAALGQADA GHPLLGAVIESAQADTRSYTGRLSLRSHPWLADHAINGAVLLPGTAFVDLALHAGDHTGC PVLAELTLESPLVLPESGAIRLQVEVAAPDEQGDRGVLVSSRAEDDPDEVPWTRHATGRL TATAPDHDGPDLRVWPPAEAEPVDLGGLYDGMAQRGYDYGPEFQGLRAAWRRGAEVFAEA ALPEGAAGTDFALSPALLDAALHALDLGEFVPRDGRPWVPFAWAGVTLRAVGAKALRVRL SAAGDHAVALDLADSTGAPVASVRSLVSRPVAAEQTAAARKGVVAQSLFRPEWSTVATPG TPAGDWALLGDGDGPLGRALRSAGVRMRCHTELSAMDVPDLLVVPCAPAEGAPPEAARHT AHRVLTLLRSWLADDRFSGSRLALVTEGDDFAASVVWGLVRSAQAEHPDRITVLDVDSWP ASGPAVAGALATMEPQLMLKDGQLRLPRLARVTPPDTGADWDPEGTVLITGGTGGLGALV ARHLVSAHGVRHLLLVSRRGPDAPGAADLRTELTALGATVTVAACDVSDRAALAGLLAGI PAAHPLRAVVHAAGVLDDGVLTSLTPQRFDDVFRPKAEAAWLLHELTADRELTGFVLFSS TATLLDGAGQANYAAANLFLEALARHRRATGRPATALAWTLWDEADGMAGRLGEAGLRRA ARSGFPPLAPAEGLALFDAALATAETTLVPLRIDQAVLRARPGGVPALLAGVVRAPSRPA ADAQAPAPAAESLATRLAALSAEEQRRTLLGLVRGQVAEVLGYDRPDAVVSGRGFLELGL DSLAAVELRNRLTAATGVTLSSTLVFDHPTPEAVAEHLAGRLIESEADRTASVFAGIRRL EAELAAVAPDDEEYAGVAARLRGLLTTWTETHRPEERPEDSALGAATAEELFDILDSELE AGR
>polyketide synthase [polyketide synthase] ATGAATGCCCTCGACGAAAACCCCTCACTGATCCAGAAGTTGCACGGGCTGTCCCGGCCC GAGCAGGACCGGGCGCTGCTGGATCTGGTGTGCCACCACGCCCTCGGCGCGCTGCGCCGC GTCCGGCCGGACGACGCACCGCGGACCCTGGCCCCGGACCGCCCCTTCACCGACCTCGGA TTCGACTCGCTCACCGCGGCCGATCTGCATGTCCGGCTGGTGGCGGCCACCGGACTGCCG CTTCCGGTCACCGTGGCCTTCGACCATCCGACCCCGGTACGACTGGCCCGGCAACTGCGC GCCGGACTGCTCGGTGCGGACGGCGGGGACGGCACGGAGACCACCTCCGAGCCCCCGCGG CAGGCGGCTGCGGCCGACGACGCGGACCCGATCGCCATCGTCGGGATCGGCTGCCGCTAC CCCGGCGGGATCGGTAGCCCGGAACAGCTGTGGCGGCTGGTCGCCGAGGGCGGCGAGGTC ATCACCGGACTGCCCGAGGACCGCGGCTGGGATCCGGAGACCCTGTACGACCCGGACCCG GACGCCCCGGGCAAGACGTACGTCCGCCGCGGCGGATTCCTCCACGACGCGGCTGACTTC GACGCGGAGTTCTTCGGGATCGGCCCGCGTGAGGCGCAGGCGATGGACCCGCAGCAGCGG CTCGTACTGGAAACCTCGTGGGAGGCGCTGGAGCGGGCCGGTATCGACCCGACCGCGCTG CGCGGCAGCCGCGCCGGGGTGTTCCTCGGCGCCGAGCCACAGGAGTACGGGCCCCGGCTG ACCCGGGCCGGCGGGCTGGAGGGCTATCTCTCCACCGGCAACACCACCAGCGTCATCGCC GGCCGGGTCGCCTACGCCCTGGGCCTGGAAGGCCCCACGATGACGGTGGACACCGCCTGT TCGGGTTCCCTGGTCGCGCTGCATCTGGCCTGCCAGGCACTGCGGCAGGGGGAGTGCTCG GTGGCCCTGGCCGGCGGGGTGGCCGTCATGGCCGCGCCCGGCACCTTCCTGTCCTTCTCC CGGCAGCGCGGCCTCGCCCCGGACGGCCGGTGCAAGGCATTCTCGGCCGACGCGGACGGC ACCGGCTGGTCCGAGGGCGTCGGCGTCCTGGTCGTGGAGCGCCTCTCCGACGCCCGCCGC GCCGGGCATCCCGTACTCGCCCTGGTCCGTGGCTCGGCGGTCAACTCCGACGGCGCCTCC AACGGGCTCACGGCACCCAACGGCCCCTCCCAGCAGCGGGTGATCCGCCAGGCCCTGGAC GCCGCCGGACTGGACCCGCACCAGGTCGACGCGGTGGAGGCGCACGGCACCGGCACCAAG CTCGGCGACCCGATCGAGGCGCAGTCCCTGATCGCGGCCTATGGCACCGGACGAACCGAA CCGCTGTGGCTGGGCTCGGTCAAATCCAACCTGGGCCACACCCAGGCCGCCGCCGGTGCC GCCGGAATCATCAAAATGATCATGGCGATGCGGCAGGAACTGCTGCCCCGCACCCTGCAT GTCACCGAGCCCACCCCGCATGTCGACTGGGCGCAGGGCAAGGCCGCACTGCTCACCGAG GCACGCCCCTGGCCGCGCACCGACCGTCCGCGCCGGGCCGGTATCTCCTCGTTCGGCTTC AGCGGCACCAACGCGCACATCATCCTGGAACAGGCCCCGCCCGCCCCCGCGCCGCCGCCC GCCACCGCACACCCCCCGGTCCTCGCGCTGCCGGTCTCCGCGCGCACTCCCGACGCCCTG CGGGCGCAGGCCGCCCGGCTGAAGTCCTTCCTCGACGAGCACCCCGGGCCGGCCCTCACC GATGTCGGCCGCGCACTGGGCACCACCCGGGCACAGCTGGAACACCGCGCGGTACTGGTC GCCGCCGACCGGGAGGAGCTCACCCGCGACCTCGACGCCCTGGCCGCGGGTGCGCCGGGG CCGGGCGTCCGCCAAGGACAGGCAGGGTCCGGCGCGGTCGCCGTGCTGTTCACCGGCCAG GGCGCCCAGCGGCTCGGGATGGGCCGCGAACTGTACGCCGCCCACCCGGTGTTCGCCCGC GCCTGGGACGAGATCTGCGCCGAGCTGGACGTCCATCTGCCCGGCCCGCTGCGCGCCGTG GTGTGGGCGGAACCGGGGAGTCCCGAGGCCGCCCTGCTGGACGAGACGGTGTACGCCCAG TCGGCGCTGTTCGCCCTGGAGACCGCACTGTTCCGGCTGCTGGAGTCCTGGGGGCTGCGG CCGGACTTCCTGCTGGGCCACTCCCTCGGCGAGGTCACCGCCGCGTATGTGGCGGGGGTC TGGTCGCTGCCCGACGCGGCCGCCCTGGTCGCCGCCCGTGGCCGGCTGATGCAGGAACTC CCGGCCGGTGGCGCGATGGTGTCCGTACGGGCCACCGAGGAGGAGGTCACCGCCGAACTC GGCCGATTCGAGGGGCGGGTGGGCCTCGCCGCGGTCAACGGGCCGGCCTCGGTGGTGCTC TCCGGGGACGAGGACGCCGTCACCGAGATCGCCGCCACCCTTGCCGCGCGCGGCCACAAG ACCCAGCGGCTGCGGGTGAGCCATGCCTTCCACTCCCCGCGGATGCAGCCGATGCTGGAC AGCTTCCGCTGGGTGACCCGGGTGATGTCCTACAAGCCGCCGAAGATTCCGGTGGTCTCC AACCTCACCGGCCGGATCGCCACCGGCGAGGAACTGTGCGCACCGGACTACTGGGTGGAC CATGTCCGCGGCGCCGTCCGGTTCGCCGACGGTATCCGCGCGCTGGCGGACCACGGGGTG CGCACCTTCCTGGAAGTGGGGCCGGACGCGGTGCTGTCCGCGATGGCACCGGACTGTGTG CCGGGCGAGGACCGGCCCGTGTTCCTGCCCACCCTCCGCCGCGACCGCGCGGAGACCCGA GAGGCCACCGGTGCCCTGGCCGCTGCCTGGGCGCACGGCGCGGAGGTGGACTGGGCCGCG TTCCACGGCGGTTCCGGCCACCCGGTGGACCTGCCCACCTATGCCTTCCAGCGGCGGCGG TTCTGGCTGGACGCGGGGGACCAGGAGCCGGACGCGGCCGCGCTCGGCCAGGCCGACGCC GGGCATCCGCTGCTCGGCGCGGTGATCGAGTCCGCGCAGGCGGACACCCGCTCGTACACC GGCCGCCTCTCGCTGCGCTCCCACCCCTGGCTGGCCGACCACGCCATCAACGGCGCCGTC CTCCTGCCGGGCACCGCCTTCGTCGACCTCGCACTGCACGCCGGTGACCACACGGGCTGC CCCGTCCTGGCCGAACTGACCCTGGAAAGCCCGCTGGTGCTGCCGGAATCCGGTGCGATA CGGCTCCAGGTCGAGGTGGCCGCACCGGACGAACAGGGCGACCGCGGGGTCCTGGTGTCC TCCCGTGCCGAGGACGATCCGGACGAGGTGCCCTGGACCCGGCACGCCACCGGCCGGCTC ACCGCCACCGCCCCGGACCACGACGGCCCCGACCTGCGCGTCTGGCCGCCGGCCGAGGCG GAACCGGTCGATCTCGGCGGGCTCTACGACGGTATGGCGCAGCGCGGTTACGACTACGGG CCGGAGTTCCAGGGCCTGCGCGCCGCCTGGCGCCGTGGCGCGGAGGTGTTCGCCGAGGCC GCACTGCCCGAGGGGGCCGCCGGCACGGACTTCGCGCTGTCCCCGGCGCTCCTCGACGCG GCCCTGCACGCCCTGGACCTGGGGGAGTTCGTCCCACGGGACGGACGGCCCTGGGTGCCG TTCGCCTGGGCCGGGGTGACCCTGCGGGCCGTCGGCGCGAAGGCGCTGCGGGTGCGGCTG TCCGCAGCGGGGGACCATGCGGTCGCCCTGGACCTCGCCGACTCCACGGGCGCCCCGGTC GCCTCGGTGCGCTCCCTGGTCTCCCGGCCGGTGGCCGCCGAACAGACCGCGGCGGCCCGG AAGGGCGTGGTGGCCCAGTCACTGTTCCGGCCGGAATGGAGCACCGTGGCCACCCCGGGC ACACCGGCCGGCGACTGGGCGCTGCTGGGCGACGGCGACGGCCCCCTCGGCCGCGCGCTA CGGTCCGCCGGGGTCCGGATGCGGTGTCACACCGAGCTGTCCGCCATGGACGTACCGGAC CTCCTGGTGGTGCCCTGCGCCCCCGCCGAGGGCGCGCCGCCCGAGGCCGCCCGCCACACC GCGCACCGCGTCCTCACGCTGCTGCGGTCCTGGCTCGCCGACGACCGGTTCTCCGGCTCC CGGCTCGCCCTGGTGACCGAGGGCGACGACTTCGCGGCCTCGGTGGTCTGGGGCCTGGTG CGCTCGGCGCAGGCCGAACACCCGGACCGGATCACCGTGCTCGACGTGGATTCCTGGCCG GCCTCCGGCCCGGCCGTGGCCGGTGCACTGGCCACCATGGAGCCCCAACTGATGCTGAAG GACGGCCAGTTGCGCTTGCCGCGGCTGGCGCGGGTCACCCCGCCGGACACCGGTGCGGAC TGGGACCCGGAAGGCACCGTGCTGATCACCGGCGGCACCGGCGGGCTCGGCGCTCTCGTC GCCCGGCACCTCGTCAGCGCGCACGGGGTGCGGCACCTGCTGTTGGTCAGCCGCCGGGGA CCGGACGCACCGGGCGCGGCGGACCTGCGCACCGAGCTGACCGCGCTCGGCGCCACCGTG ACCGTGGCCGCCTGCGATGTCTCCGACCGTGCGGCCCTGGCCGGGCTGCTCGCCGGGATC CCCGCCGCGCATCCGCTGCGCGCCGTGGTGCACGCCGCCGGGGTGCTCGACGACGGAGTC CTCACCTCGCTGACCCCGCAACGCTTCGACGACGTCTTCCGGCCCAAGGCGGAGGCGGCC TGGCTGCTGCACGAACTGACCGCGGATCGGGAACTCACCGGGTTCGTCCTGTTCTCCTCC ACCGCCACCTTGCTCGACGGGGCCGGCCAGGCGAACTACGCGGCCGCCAACCTGTTCCTC GAAGCGCTCGCCCGGCACCGCCGAGCCACCGGCCGCCCGGCGACCGCGCTGGCCTGGACG CTGTGGGACGAGGCCGACGGGATGGCCGGCCGGCTCGGCGAGGCCGGTCTGCGCCGAGCC GCCCGGTCCGGTTTCCCGCCGCTCGCCCCGGCCGAAGGCCTGGCACTGTTCGACGCCGCG CTCGCCACCGCGGAGACCACCCTGGTCCCGCTGCGCATCGACCAGGCCGTGCTGCGGGCC CGTCCCGGCGGCGTCCCCGCGCTGCTGGCCGGGGTGGTCCGGGCACCGTCCCGGCCTGCC GCCGACGCCCAGGCACCGGCTCCGGCCGCGGAATCCCTGGCCACCCGGCTGGCGGCGCTC TCCGCCGAGGAGCAGCGGCGCACCCTGCTGGGCCTCGTCCGCGGGCAGGTCGCCGAGGTC CTCGGCTACGACCGCCCGGACGCGGTGGTCAGCGGCCGGGGCTTCCTCGAACTCGGCCTG GATTCGCTCGCCGCGGTCGAACTGCGCAACCGGCTGACCGCCGCCACCGGGGTGACCCTG TCCTCCACGCTGGTCTTCGACCACCCCACGCCCGAGGCGGTCGCGGAGCACTTGGCCGGC CGCCTCATCGAGAGCGAAGCGGACCGGACCGCCTCGGTGTTCGCCGGAATCCGCCGGCTG GAAGCGGAGCTGGCGGCCGTGGCGCCGGACGACGAGGAGTACGCCGGTGTCGCGGCCCGG CTGCGCGGACTGCTCACCACATGGACCGAAACGCATCGCCCCGAAGAGCGGCCGGAGGAC TCCGCCCTGGGGGCCGCCACCGCCGAGGAACTCTTCGACATCCTCGACAGCGAACTGGAG GCCGGCAGATAA
Feature
BLASTP Database:UniProtKB:2011_09 |
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InterPro Database:interpro:38.0 |
IPR001227 Acyl transferase domain (Domain)
IPR002198 Short-chain dehydrogenase/reductase SDR (Family)
IPR006162 Phosphopantetheine attachment site (PTM)
IPR009081 Acyl carrier protein-like (Domain)
IPR014030 Beta-ketoacyl synthase, N-terminal (Domain)
IPR014031 Beta-ketoacyl synthase, C-terminal (Domain)
IPR014043 Acyl transferase (Domain)
IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase (Domain)
IPR016036 Malonyl-CoA ACP transacylase, ACP-binding (Domain)
IPR016038 Thiolase-like, subgroup (Domain)
IPR016039 Thiolase-like (Domain)
IPR016040 NAD(P)-binding domain (Domain)
IPR020801 Polyketide synthase, acyl transferase domain (Domain)
IPR020806 Polyketide synthase, phosphopantetheine-binding domain (Domain)
IPR020807 Polyketide synthase, dehydratase domain (Domain)
IPR020841 Polyketide synthase, beta-ketoacyl synthase domain (Domain)
IPR020842 Polyketide synthase/Fatty acid synthase, KR (Domain)
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SignalP | No significant hit |
TMHMM | No significant hit |