Lydi_00260 : CDS information

Location

Organism	Streptomyces sp.
Strain	TP-A0598 (=NBRC 110027)
Entry name	Lydicamycin
Contig	BBNO01000003part
Start / Stop / Direction	117,752 / 116,262 / - [in whole cluster] 117,752 / 116,262 / - [in contig]
Location	complement(116262..117752) [in whole cluster] complement(116262..117752) [in contig]
Type	CDS
Length	1,491 bp (496 aa)

Annotation

Category	5.1 general function
Product	putative amidase
Product (GenBank)	putative amidase
Gene	TPA0598_03_00900
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
Reference	ACC A0A0P4R475 PmId [26380643] Draft genome sequence of marine-derived Streptomyces sp. TP-A0598, a producer of anti-MRSA antibiotic lydicamycins. (Stand Genomic Sci. , 2015) comment Streptomyces sp. TP-A0598におけるputative lydicamycin biosynthetic gene clusterの報告。このclusterが実際にlydicamycin産生に関わるかどうかの実験的な確認はされていない。 TPA0598_03_00900(496aa): amidase 本文中にコメントなし。
Related Reference	ACC Q93LE2 PmId [12521300] ( , ) comment BLAST id34% Geobacillus stearothermophilus_gatA Glutamyl-tRNA(Gln) amidotransferase subunit A

Sequence

>putative amidase [putative amidase]
MTENDLLWLPARELVELQRRREVSAREILDAHLAQIDAVNPKVNAIITLAEDRAHELAAR
ADAAVARGELLGPLHGLPVAHKDLAPTKGIRTTYGSPLYAGHVPDHDALVVEQLVHAGAV
TVGKTNVPEFGAGIQSTNELFGPTRNPYDLSLTAGGSSGGAAAAVATGMVALADGGDTGG
SLRNPAAFCNVVGLRPSVGTVPMWPATDPFAPLSIQGPIGRTVDDVALQMAVLTRADPRS
PWGLGDPSRFHAGLEDDFSDVPVAWSPDLGGQLAVDDAVRTAMEPVPGALAGISRKVGVA
APDMTGADEAFRTLRGWYRALNYGDRYAANPEAFGIRVRQDIESGLATTSAGLMRAHKLR
GLLFQRFVEFTREYRYLVTVTTQVLPWSADQLWPERIGHTRSENYLDCMRSMYWFTVLGV
PALSVPAGFTADGLPVGVQIVGRSGDDLGVLRLARQIERTLGAGLRRPAVALPVTGGGTD
GVRVTGGGTGSARVTG

>putative amidase [putative amidase]
GTGACCGAGAATGACCTCCTGTGGCTGCCGGCCCGGGAACTGGTGGAGCTCCAGCGGCGC
CGTGAGGTGTCGGCGCGCGAGATCCTTGATGCGCACCTCGCCCAGATCGACGCGGTGAAC
CCGAAGGTCAACGCGATCATCACGCTCGCCGAGGACCGCGCCCATGAGCTCGCCGCCCGC
GCCGATGCCGCCGTCGCACGGGGCGAGCTGCTGGGCCCGCTGCACGGCCTCCCGGTCGCG
CACAAGGACCTCGCCCCGACCAAAGGCATCCGGACGACGTACGGTTCTCCGCTCTACGCC
GGCCATGTGCCGGACCATGACGCGTTGGTCGTGGAGCAGTTGGTGCACGCGGGGGCCGTC
ACGGTGGGCAAGACCAATGTGCCCGAGTTCGGTGCGGGCATCCAGAGCACCAACGAGCTG
TTCGGCCCCACCCGCAACCCGTACGACCTGAGCCTGACGGCCGGTGGCAGCAGCGGGGGT
GCGGCGGCCGCCGTCGCGACGGGCATGGTGGCCCTCGCCGACGGCGGTGACACCGGCGGC
TCGCTGCGCAACCCGGCGGCCTTCTGCAATGTGGTGGGGCTGCGGCCCTCGGTGGGCACG
GTTCCGATGTGGCCGGCCACCGATCCGTTCGCGCCGCTGAGCATCCAGGGCCCGATCGGC
CGCACCGTCGACGATGTCGCGCTCCAGATGGCGGTGCTGACCCGGGCCGATCCGAGGTCC
CCCTGGGGCCTGGGCGATCCGTCCCGGTTCCATGCCGGTCTGGAGGACGACTTCTCGGAC
GTACCGGTGGCGTGGAGTCCGGACCTCGGCGGCCAACTGGCGGTGGACGACGCCGTACGC
ACCGCGATGGAGCCGGTGCCCGGGGCCCTGGCCGGGATCTCCCGCAAGGTCGGCGTCGCG
GCCCCGGACATGACCGGCGCCGACGAGGCGTTTCGCACACTGCGCGGCTGGTACCGGGCG
CTCAACTACGGTGACCGGTACGCCGCGAACCCGGAGGCCTTCGGCATCAGGGTGCGCCAG
GACATCGAGAGCGGGCTGGCGACGACCTCGGCCGGTCTGATGCGCGCACACAAGCTGCGC
GGGCTGCTCTTCCAGCGGTTCGTGGAATTCACCCGCGAGTACCGCTATCTGGTGACGGTC
ACGACCCAGGTGCTGCCGTGGAGCGCGGATCAGCTGTGGCCGGAGCGCATCGGGCACACC
AGGAGCGAGAACTATCTCGACTGCATGCGCTCCATGTACTGGTTCACGGTGCTCGGTGTG
CCCGCCCTGTCGGTGCCGGCCGGCTTCACGGCGGACGGGCTGCCGGTCGGGGTGCAGATC
GTCGGGCGCAGCGGCGACGACCTCGGCGTGCTGCGGCTGGCCCGGCAGATCGAGCGGACG
CTCGGTGCGGGGCTGCGGCGGCCGGCCGTCGCGCTCCCGGTCACCGGCGGCGGTACGGAC
GGCGTACGCGTCACCGGCGGCGGTACGGGCAGCGCCCGCGTCACCGGCTGA

Feature

BLASTP Database:UniProtKB:2011_09	show BLAST table
InterPro Database:interpro:38.0	IPR000120 Amidase (Family) PF01425 Amidase IPR020556 Amidase, conserved site (Conserved_site) PS00571 AMIDASES IPR023631 Amidase signature domain (Domain) SSF75304 Amidase signature (AS) enzymes G3DSA:3.90.1300.10 no description
SignalP	No significant hit
TMHMM	No significant hit

Lydi_00250 last last