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Microbe : Haloplasma contractile

Microbe Description

NBRC No. Not assigned
Scientific name Haloplasma contractile
Synonymous name Not assigned
History
Other culture collection No. DSM 18853 =JCM 14575
Other No. SSD-17B
Reference
18326567
A new lineage of halophilic, wall-less, contractile bacteria from a brine-filled deep of the Red Sea. (J Bacteriol. 2008)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseHLPCO_002319
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireA
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseHLPCO_003136
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferaseHLPCO_001739 HLPCO_001889
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseHLPCO_001663 HLPCO_002390 HLPCO_002005
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseHLPCO_002452
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinHLPCO_002465
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinHLPCO_001263
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinHLPCO_001263
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseHLPCO_001293
RIBA
(NRULE_0201)
GTP cyclohydrolase-2HLPCO_001293
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDHLPCO_001291
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseHLPCO_001294
RIBE
(NRULE_0204)
Riboflavin synthaseHLPCO_001292
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFHLPCO_000351
Streptomycin resistance(NFUNC_0054)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferaseHLPCO_001739 HLPCO_001889
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterHLPCO_001283
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSHLPCO_001517
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTHLPCO_001512

Genomic Overview

BioProject IDPRJNA66977
Locus_tagHLPCO
INSDC entriesAFNU00000000
Sequence statusContig
Current status
Contig number34
Size(bp) 3,404,505
Gene 3,035
Finishing goal
Assembly methodNewbler v. 2.8; SOAPdenovo v. Nov-20100; Velvet v. Jun-2013; CISA v. 2013
Coverage400x
Technology
  • 454
  • Illumina GAII
Reference
  • A new lineage of halophilic, wall-less, contractile bacteria from a brine-filled deep of the Red Sea. (J Bacteriol. 2008) PMID: 18326567

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
uncompressed
1.0 MB 911.1 KB 600.3 KB 259.8 KB