Microbe : Haloplasma contractile

Microbe Description

NBRC No.	Not assigned
Scientific name	Haloplasma contractile
Synonymous name	Not assigned
History
Other culture collection No.	DSM 18853 =JCM 14575
Other No.	SSD-17B
Reference	18326567 A new lineage of halophilic, wall-less, contractile bacteria from a brine-filled deep of the Red Sea. (J Bacteriol. 2008)

Functional Potential >>Details


Type	Pattern	Component Gene		CDS
Alanine racemization(NFUNC_0063)
Require	A	ALR (NRULE_0228)	Alanine racemase	HLPCO_002319
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
Require	A	AAC3 (NRULE_0149)	Aminoglycoside N(3')-acetyltransferase	HLPCO_003136
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
Require	A	ANT6 (NRULE_0151)	Aminoglycoside 6-adenylyltransferase	HLPCO_001739 HLPCO_001889
Aromatic azo compounds degradation(NFUNC_0073)
Require	A	AZOR (NRULE_0236)	FMN-dependent NADH-azoreductase	HLPCO_001663 HLPCO_002390 HLPCO_002005
Bacitracin resistance(NFUNC_0022)
Require	A	UPPP (NRULE_0097)	Undecaprenyl-diphosphatase	HLPCO_002452
Metal-binding protein(NFUNC_0105)
Require	A	MOP (NRULE_0322)	Putative molybdenum-binding protein	HLPCO_002465
Require	C	MODA (NRULE_0324)	Molybdate ABC transporter substrate-binding protein	HLPCO_001263
Molybdate transport (ABC transporter)(NFUNC_0097)
Require	A	MODA (NRULE_0324)	Molybdate ABC transporter substrate-binding protein	HLPCO_001263
Riboflavin biosynthesis(NFUNC_0058)
Require	A	RIBB (NRULE_0200)	3,4-dihydroxy-2-butanone 4-phosphate synthase	HLPCO_001293
		RIBA (NRULE_0201)	GTP cyclohydrolase-2	HLPCO_001293
		RIBD (NRULE_0202)	Riboflavin biosynthesis protein RibD	HLPCO_001291
		RIBH (NRULE_0203)	6,7-dimethyl-8-ribityllumazine synthase	HLPCO_001294
		RIBE (NRULE_0204)	Riboflavin synthase	HLPCO_001292
Participant		RIBF (NRULE_0205)	Riboflavin biosynthesis protein RibF	HLPCO_000351
Streptomycin resistance(NFUNC_0054)
Require	A	ANT6 (NRULE_0151)	Aminoglycoside 6-adenylyltransferase	HLPCO_001739 HLPCO_001889
Uptake of osmoprotectant(NFUNC_0061)
Require	C	BCCT (NRULE_0220)	BCCT family transporter	HLPCO_001283
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
Require	A	PDXS (NRULE_0206)	Pyridoxal biosynthesis lyase PdxS	HLPCO_001517
Require	A	PDXT (NRULE_0207)	Glutamine amidotransferase subunit PdxT	HLPCO_001512

Genomic Overview

BioProject ID	PRJNA66977
Locus_tag	HLPCO
INSDC entries	AFNU00000000
Sequence status	Contig
Current status
Contig number	34
Size(bp)	3,404,505
Gene	3,035
Finishing goal
Assembly method	Newbler v. 2.8; SOAPdenovo v. Nov-20100; Velvet v. Jun-2013; CISA v. 2013
Coverage	400x
Technology	454 Illumina GAII

Reference

A new lineage of halophilic, wall-less, contractile bacteria from a brine-filled deep of the Red Sea. (J Bacteriol. 2008) PMID: 18326567

Data Download

Genomic nucleotide sequence	Nucleotide sequence of the coding regions	Translation of the coding sequneces	List of genes / ORFs
FASTA gz	FASTA gz	FASTA gz	TSV uncompressed

1.0 MB	911.1 KB	600.3 KB	259.8 KB