Rifam_00010 : CDS information

Location

Organism	Amycolatopsis mediterranei
Strain	S699
Entry name	Rifamycin
Contig	AF040570
Start / Stop / Direction	145 / 720 / + [in whole cluster] 145 / 720 / + [in contig]
Location	145..720 [in whole cluster] 145..720 [in contig]
Type	CDS
Length	576 bp (191 aa)

Annotation

Category	4.2 translation
Product	putative 50S ribosomal protein L10
Product (GenBank)	RplJ
Gene
Gene (GenBank)	rplJ
EC number
Keyword
Note
Note (GenBank)	ribosomal protein L10
Reference	ACC Q7BUF7 comment [PMID: 9512878, 9497318, 11278540] UniProtに登録されているこれらの論文には、図表を含め、このORFについての記述がない。その他にも記載論文なし。
Related Reference	ACC P0A7J3 PmId [3049601] ( , ) [10747797] ( , ) comment Blast id32.06%, 1e-12 E.coli_rplJ 50S ribosomal protein L10 C末deletion mutantを作成し、L7/L12との相互作用をみている。

Sequence

>putative 50S ribosomal protein L10 [RplJ]
MPLLVPNRDRKAGVVQPSSIAESFRTSSATVVTQYTGLSVSQLSQLRRALGTSAKYRVAK
NTLVKRAAEDAGIQGLEDLFVGATAIAFVEGEAVDAAKAIRDFAKDNNALVIKGGYMDGR
ALSVDEINRIADLDSREVLLAKAAGAFKAKLSQAAALFQAPASQVARLAAALEEKQRNAA
GTEAAEAPAES

>putative 50S ribosomal protein L10 [RplJ]
ATGCCGTTGTTGGTGCCGAACAGGGACCGGAAGGCCGGCGTCGTCCAGCCGAGCTCGATC
GCGGAGAGCTTCCGCACCAGCTCGGCCACCGTCGTTACCCAGTACACCGGCCTCTCCGTG
TCCCAGCTGTCCCAGCTGCGCCGCGCTCTCGGCACCAGTGCCAAGTACCGGGTCGCGAAG
AACACCCTGGTCAAGCGGGCGGCCGAGGACGCCGGCATCCAGGGTCTCGAGGACCTGTTC
GTCGGCGCGACCGCCATCGCCTTCGTCGAGGGTGAAGCAGTCGACGCCGCCAAGGCGATT
CGCGACTTCGCGAAGGACAACAACGCGCTTGTGATCAAGGGCGGCTACATGGACGGCCGA
GCGCTGTCCGTGGACGAGATCAACCGGATTGCCGATCTCGACAGCCGTGAGGTCCTGCTC
GCCAAGGCGGCGGGCGCGTTCAAGGCGAAGCTTTCCCAGGCCGCCGCGCTGTTCCAGGCG
CCGGCGTCCCAGGTCGCCCGCCTGGCTGCCGCGCTGGAGGAGAAGCAGCGCAACGCCGCC
GGTACCGAAGCAGCCGAAGCACCCGCCGAGAGCTGA

Feature

BLASTP Database:UniProtKB:2011_09	show BLAST table
InterPro Database:interpro:38.0	IPR001790 Ribosomal protein L10/acidic P0 (Family) PF00466 Ribosomal_L10
SignalP	No significant hit
TMHMM	No significant hit

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