Rifam_00240 : CDS information
Location
Organism | Amycolatopsis mediterranei |
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Strain | S699 |
Entry name | Rifamycin |
Contig | AF040570 |
Start / Stop / Direction | 52,544 / 57,730 / + [in whole cluster] 52,544 / 57,730 / + [in contig] |
Location | 52544..57730 [in whole cluster] 52544..57730 [in contig] |
Type | CDS |
Length | 5,187 bp (1,728 aa) |
Annotation
Category | 1.1 PKS |
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Product | polyketide synthase |
Product (GenBank) | RifD |
Gene | |
Gene (GenBank) | rifD |
EC number | |
Keyword | |
Note | |
Note (GenBank) |
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Reference |
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PKS/NRPS Module
8 | methylmalonyl-CoA |
Sequence
>polyketide synthase [RifD] MADEGQLRDYLKRAIADARDARTRLREVEEQAREPIAIVAMACRYPGGVSSPEDLWRLVA EGTDAVSAFPGDRGWDVDGLVDPDPDRPGTTYTDQGGFLHEAGLFDAGFFGISPREAVAM DPQQRLLLETSWEAIERTGTDPLSLKGSDIGVFTGVASMGYGAGGGVVAPELEGFVGTGA APCIASGRVSYVLGFEGPAVTVDTGCSSSLVAMHLAAQALRRGECSMALAGGAMVMAQPG SFVSFSRQRGLALDGRCKAFSDSADGMGLAEGVGVIALERLSVARERGHRVLAVLRGIAV NQDGASNGLTAPNGPSQQRVIRAALAEAGLSPSDVDAVEGHGTGTTLGDPIEAQALLATY GKGRDPEKPLWLGSVKSNLGHTQAAAGVASVIKMVQALRHGVLPPTLHVDRPSTEVDWSA GAVSLLTEAREWPREGRPRRAGVSSFGISGTNAHLILEEAPEEEPPVAEAPSAGVVPVVV SARGALAGQAGRLAAFLEASDEPLVTVAGALICGRSRFGDRAVVVAGTRAEATAGLAALA RGESAADVVTGTVAASGVPGKLVWVFPGQGSQWVGMGRELLEASPVFAARIAECAAALEP WIDWSLLDVLRGEGDLDRVDVVQPASFAVMVGLAAVWSSVGVVPDAVLGHSQGEIAAACV SGALSLQDAAKVVALRSQAIAAKLAGRGGMASVALSEEDAVARLRHWADRVEVAAVNSPS SVVIAGDAEALDQALEALTGQDIRVRRVAVDYASHTRHVEDIQEPLAEALAGIEAHAPTL PFFSTLTGDWIREAGVVDGGYWYRNLRNQVGFGPAVAELLGLGHRVFVEVSAHPVLVQAI SAIADDTDAVVTGSLRREEGGLRRLLTSMAELFVRGVDVDWATMVPPARVDLPTYAFDHQ HYWLRYVETATDAAGPVVRLPQTGGLVFTTEWSLKSQPWLAEHTLEDLVVVPGAALVELA VRAGDEAGTPVLDELVIETPLVVPERGAIRVQVTVSGPDDGTRTLEVHSQPEDATDEWTR HATGTLSATPDESSGFDFTAWPPPGARQLDGVPAIWRAGDEIFAEVSLPDDADAEAFGIH PALLDAALHPALPGDDGLTQPMEWRGLTLHAAGASTLRVRLVPGGFLEAADGAGSLVVTA KEVALRPVTIARSRTTTRDSLFQLNWIELPESGVVAAADDTEVLEVPAGDSPLAATSRVL ERLQTWLTEPEAEQLVVVTRGAVPAGDTPVTDPAAAAVWGLVRSAQAENPDRIVLLDTDG EVPLGAVLAGGEPQVAVRGTALYVPRLARADAAPVSGLHGTVLVSGAGVLGEIVARHLVT RHGVRKLVLASRRGLDADGAKDLVTDLTGEGADVSVVACDLADRNQVAALLADHRPASVI HTAGVLDDGVIGTLTPERLAKVFAPKVDAVRHLDELTRDLDLDAFVVFSSGSGVFGSPGQ GNYAAANAFLDAAMASRRAAGLPGLSLAWGLWEQATGMTAHLGGTDQARMSRGGVRPITA EEGMALFDTALGAQPALLVPVKLDLREVRAGGAVPHLLRGLVRAGRRQAQAASTVDNQLL GRLAGLGAPEQEALLVDLVRGQVAAVLGHAGPDAVRADTAFKDAGFDSLTSVDLRNRLRE STGLKLPATLAFDYPTPLVLARHLRDELGAGDDALSVVHARLEDVEALLGGLRLDESTKT GLTLRLQGLVARCNGVNDQTGGETLADRLEAASADEVLDFIDEELGLT
>polyketide synthase [RifD] GTGGCTGACGAGGGACAACTCCGCGACTACCTCAAGCGGGCCATCGCCGACGCCCGCGAC GCCCGCACGCGGCTGCGCGAGGTCGAGGAGCAGGCGCGGGAGCCGATCGCCATCGTCGCC ATGGCGTGCCGGTACCCGGGCGGGGTGTCCTCGCCCGAGGACCTGTGGCGGCTGGTGGCC GAGGGGACCGACGCCGTCTCCGCGTTCCCCGGCGACCGCGGCTGGGACGTCGACGGGCTC GTCGACCCGGACCCCGACCGCCCGGGCACGACGTACACGGACCAGGGTGGCTTCCTCCAC GAGGCCGGCCTCTTCGACGCGGGGTTCTTCGGGATCTCGCCGCGGGAGGCCGTCGCGATG GACCCGCAGCAGCGGCTGCTGCTGGAGACGTCCTGGGAGGCCATCGAACGCACCGGCACC GACCCGCTTTCGCTGAAGGGCAGCGACATCGGCGTCTTCACCGGCGTCGCGAGCATGGGT TACGGCGCCGGTGGCGGCGTGGTCGCGCCGGAGCTGGAGGGTTTCGTCGGCACCGGTGCG GCGCCGTGCATCGCGTCCGGCCGGGTGTCGTACGTCCTCGGCTTCGAAGGCCCGGCGGTC ACCGTCGACACCGGGTGTTCGTCGTCGCTGGTGGCGATGCACCTCGCCGCGCAGGCGCTG CGGCGGGGTGAGTGCTCGATGGCTCTGGCCGGCGGCGCGATGGTGATGGCCCAGCCGGGT TCGTTCGTGTCCTTCTCGCGGCAACGCGGGCTCGCCCTGGACGGGCGCTGCAAGGCGTTT TCGGACAGCGCCGACGGGATGGGACTGGCCGAGGGCGTCGGCGTCATCGCGCTGGAACGG CTGTCGGTCGCCCGTGAGCGTGGGCACCGGGTGCTGGCCGTGCTGCGCGGTATCGCGGTG AACCAGGATGGCGCGTCGAACGGCTTGACCGCCCCGAACGGCCCGTCCCAGCAGCGGGTG ATCCGCGCCGCGCTGGCCGAAGCCGGGCTGTCGCCGTCCGATGTGGACGCCGTCGAAGGG CACGGGACGGGCACGACGCTGGGCGATCCGATCGAAGCGCAGGCGTTGCTGGCCACCTAC GGCAAGGGCCGGGACCCGGAGAAGCCGCTCTGGCTGGGCTCGGTGAAGTCGAACCTCGGG CACACGCAAGCGGCCGCGGGCGTGGCCAGCGTGATCAAGATGGTGCAGGCGCTGCGCCAC GGCGTGCTGCCCCCGACGCTGCACGTCGACCGGCCGTCCACCGAAGTCGACTGGTCGGCC GGTGCGGTCTCGCTGTTGACGGAGGCTCGGGAGTGGCCGCGCGAAGGGCGGCCGCGCCGG GCCGGGGTGTCCTCGTTCGGGATCAGCGGGACCAACGCGCACCTCATCCTGGAGGAAGCG CCCGAGGAGGAGCCGCCCGTCGCCGAAGCGCCTTCCGCCGGAGTGGTGCCCGTGGTGGTG TCGGCTCGTGGGGCCCTGGCGGGTCAGGCCGGCCGGCTGGCCGCGTTCCTCGAGGCGTCC GACGAGCCGTTGGTGACCGTCGCCGGGGCGCTGATCTGCGGCCGGTCCCGGTTCGGCGAC CGGGCCGTCGTGGTGGCGGGCACGCGCGCAGAGGCGACGGCCGGGCTGGCCGCGCTGGCC CGCGGCGAAAGCGCCGCCGACGTCGTGACCGGCACGGTCGCGGCCTCGGGCGTGCCGGGC AAGCTCGTGTGGGTGTTCCCGGGCCAGGGTTCGCAGTGGGTGGGCATGGGCCGGGAGCTC CTCGAAGCCTCGCCGGTGTTCGCCGCGCGGATCGCGGAGTGCGCGGCTGCCCTCGAACCG TGGATCGACTGGTCGCTGCTGGACGTCCTCCGTGGCGAGGGCGACCTCGACCGCGTCGAC GTGGTGCAGCCCGCGAGTTTCGCGGTGATGGTCGGCCTGGCCGCGGTGTGGTCGTCCGTC GGGGTGGTGCCCGACGCGGTGCTCGGGCACTCGCAGGGGGAGATCGCGGCGGCGTGCGTG TCGGGGGCGTTGTCGCTGCAGGACGCGGCGAAGGTGGTCGCGTTGCGCAGCCAGGCGATC GCGGCGAAGCTGGCCGGCCGCGGCGGCATGGCCTCGGTCGCGCTGAGCGAGGAAGACGCG GTCGCGCGGTTGCGGCACTGGGCGGACCGGGTCGAGGTGGCCGCGGTCAACAGCCCGTCG TCGGTGGTGATCGCCGGCGACGCCGAAGCCCTCGACCAGGCCCTCGAAGCACTGACCGGC CAGGACATCCGGGTCCGGCGGGTGGCGGTGGACTACGCCTCGCACACCCGGCACGTCGAA GACATCCAGGAGCCCCTCGCCGAGGCACTGGCCGGGATCGAGGCGCACGCGCCGACCCTG CCGTTCTTCTCGACCCTCACCGGTGACTGGATTCGCGAAGCGGGCGTCGTGGACGGCGGC TACTGGTACCGGAACCTGCGCAACCAGGTCGGTTTCGGCCCGGCGGTGGCCGAGCTGCTC GGCCTCGGCCACCGGGTGTTCGTCGAGGTCAGCGCGCACCCCGTGCTCGTCCAGGCGATC AGCGCGATTGCCGACGACACCGACGCGGTCGTCACCGGCTCGCTGCGGCGCGAGGAGGGC GGCCTGCGGCGGCTGCTGACGTCGATGGCCGAGCTGTTCGTCCGCGGAGTCGACGTGGAC TGGGCCACGATGGTGCCGCCAGCGCGGGTCGATTTGCCGACCTACGCCTTCGACCACCAG CACTACTGGCTGCGGTACGTCGAGACCGCGACCGACGCGGCCGGTCCGGTGGTCCGGCTG CCGCAGACGGGCGGCCTGGTCTTCACCACCGAGTGGTCGCTGAAGTCACAGCCGTGGCTG GCCGAGCACACCCTGGAAGACCTGGTCGTCGTCCCCGGCGCGGCACTGGTCGAGCTGGCC GTCCGGGCCGGTGACGAGGCCGGGACCCCGGTGCTGGACGAACTCGTCATCGAGACGCCC CTGGTCGTGCCGGAACGCGGCGCGATCCGGGTGCAGGTCACGGTGAGCGGACCGGACGAC GGCACACGGACCCTGGAAGTGCATTCCCAGCCCGAAGACGCCACCGACGAATGGACCCGG CACGCCACCGGCACGCTGTCGGCGACCCCGGACGAAAGCAGCGGGTTCGACTTCACGGCC TGGCCGCCCCCGGGCGCCCGGCAGCTCGACGGCGTTCCGGCGATCTGGCGGGCCGGCGAC GAGATCTTCGCCGAAGTCTCCCTGCCCGACGATGCGGACGCCGAGGCATTCGGCATCCAC CCCGCGCTCCTGGACGCGGCCCTGCACCCCGCCCTGCCCGGCGATGACGGTCTGACGCAG CCCATGGAATGGCGTGGCCTGACGCTGCACGCCGCGGGGGCGTCGACGCTGCGGGTCCGG TTGGTGCCCGGCGGGTTCCTGGAAGCGGCCGACGGCGCCGGCAGCCTGGTCGTCACGGCG AAGGAGGTTGCCCTCCGCCCGGTGACGATCGCGCGGTCGCGCACCACCACCCGAGACTCG CTGTTCCAGCTGAACTGGATCGAGCTGCCCGAGAGTGGCGTGGTGGCCGCGGCAGACGAC ACCGAGGTGCTGGAGGTGCCCGCGGGCGATTCCCCGCTGGCGGCGACCTCCCGAGTCTTG GAGCGGCTCCAGACCTGGCTGACCGAGCCCGAGGCGGAACAGCTGGTCGTCGTGACGCGC GGCGCGGTGCCCGCCGGGGACACCCCGGTGACCGACCCGGCCGCGGCGGCGGTCTGGGGC CTGGTCCGGTCCGCGCAGGCGGAGAACCCGGACCGGATCGTCCTGCTCGACACCGACGGC GAAGTCCCGCTGGGTGCGGTGCTGGCCGGCGGCGAGCCGCAGGTCGCGGTGCGCGGCACG GCGCTGTACGTCCCGCGCCTGGCCCGCGCCGACGCGGCCCCGGTATCCGGTCTACATGGG ACGGTCCTCGTCTCCGGTGCCGGTGTGCTCGGCGAGATCGTGGCGCGGCACCTGGTCACC CGCCACGGCGTGCGCAAGCTGGTGCTCGCCAGCCGCCGCGGCCTGGACGCCGACGGCGCG AAGGACCTCGTCACCGACCTCACCGGCGAGGGCGCGGACGTGTCCGTCGTCGCCTGCGAC CTGGCCGATCGGAACCAGGTGGCCGCGCTGCTGGCCGACCACCGCCCGGCGAGCGTCATC CACACGGCGGGCGTCCTCGACGACGGCGTCATCGGGACGCTGACCCCGGAGCGGCTGGCC AAGGTGTTCGCGCCCAAGGTCGACGCGGTCCGCCATCTCGACGAGCTGACTCGCGACCTC GACCTCGACGCGTTCGTCGTGTTCTCCTCCGGCTCCGGCGTGTTCGGTTCGCCGGGGCAG GGCAACTACGCGGCGGCGAACGCGTTCCTGGACGCGGCGATGGCGAGCCGCCGCGCGGCG GGTCTTCCTGGTCTCTCGCTGGCGTGGGGCCTGTGGGAACAGGCCACCGGCATGACCGCG CACCTCGGCGGCACCGACCAGGCCCGGATGAGCCGGGGCGGGGTGCGGCCGATCACGGCC GAGGAAGGCATGGCCCTGTTCGACACGGCACTGGGTGCGCAGCCCGCGCTGCTCGTGCCG GTCAAGCTCGACCTGCGGGAGGTGCGGGCCGGCGGGGCCGTGCCGCACCTGCTGCGCGGG CTGGTCCGGGCCGGGCGGCGGCAGGCCCAAGCCGCGTCCACAGTGGACAACCAGCTGCTG GGCCGGCTGGCCGGGCTGGGCGCGCCCGAGCAGGAGGCGCTGCTCGTCGACCTCGTGCGC GGCCAGGTCGCGGCGGTGCTCGGGCACGCCGGGCCGGACGCGGTCCGCGCCGACACGGCG TTCAAGGACGCCGGGTTCGACTCGCTCACCTCGGTCGACCTGCGCAACCGGCTGCGGGAG AGCACCGGGCTGAAGCTGCCCGCCACGCTCGCCTTCGACTACCCGACCCCGCTGGTCCTC GCCCGGCACCTGCGTGACGAGCTCGGGGCCGGCGACGACGCGCTTTCGGTGGTGCACGCG CGGCTCGAAGACGTCGAGGCGCTGCTCGGCGGGCTGCGCCTCGACGAATCCACGAAGACC GGTCTCACCCTCCGGCTGCAGGGCCTGGTCGCCCGGTGCAACGGCGTGAACGACCAGACC GGCGGCGAAACGCTGGCGGACCGGCTCGAGGCCGCGTCCGCCGACGAAGTCCTCGACTTC ATCGACGAGGAGCTGGGTCTCACCTGA
Feature
BLASTP Database:UniProtKB:2011_09 |
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InterPro Database:interpro:38.0 |
IPR001227 Acyl transferase domain (Domain)
IPR006162 Phosphopantetheine attachment site (PTM)
IPR009081 Acyl carrier protein-like (Domain)
IPR013968 Polyketide synthase, KR (Domain)
IPR014030 Beta-ketoacyl synthase, N-terminal (Domain)
IPR014031 Beta-ketoacyl synthase, C-terminal (Domain)
IPR014043 Acyl transferase (Domain)
IPR015083 Polyketide synthase, docking (Domain)
IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase (Domain)
IPR016036 Malonyl-CoA ACP transacylase, ACP-binding (Domain)
IPR016038 Thiolase-like, subgroup (Domain)
IPR016039 Thiolase-like (Domain)
IPR016040 NAD(P)-binding domain (Domain)
IPR018201 Beta-ketoacyl synthase, active site (Active_site)
IPR020801 Polyketide synthase, acyl transferase domain (Domain)
IPR020806 Polyketide synthase, phosphopantetheine-binding domain (Domain)
IPR020807 Polyketide synthase, dehydratase domain (Domain)
IPR020841 Polyketide synthase, beta-ketoacyl synthase domain (Domain)
IPR020842 Polyketide synthase/Fatty acid synthase, KR (Domain)
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SignalP | No significant hit |
TMHMM | No significant hit |