Rifam_00360
Rifam_00370 : CDS information
Location
| Organism | Amycolatopsis mediterranei |
|---|---|
| Strain | S699 |
| Entry name | Rifamycin |
| Contig | AF040570 |
| Start / Stop / Direction | 78,416 / 79,984 / + [in whole cluster] 78,416 / 79,984 / + [in contig] |
| Location | 78416..79984 [in whole cluster] 78416..79984 [in contig] |
| Type | CDS |
| Length | 1,569 bp (522 aa) |
Annotation
| Category | 4.3 transport |
|---|---|
| Product | rifamycin resistance transporter |
| Product (GenBank) | RifP |
| Gene | |
| Gene (GenBank) | rifP |
| EC number | |
| Keyword | |
| Note | |
| Note (GenBank) |
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| Reference |
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Sequence
>rifamycin resistance transporter [RifP] MHATAAVTETRNPRRWLILAVISLAQLVVLVDNTVLNLAIPKLTEDLGATTADIQWMINA YALVQSGLLLTAGSFSDRYGRKRSLLAGLLLFGVGSLAAAFSLSSGQLIAARAGMGIGGA LLTTTTLAVVMQVFDEKELPKAIGLWSAVSSFGYASGPLIGGALLAHFWWGSIFLINIPV ALLGCVAVAKLVPESKDPQGARPDLVGAALSTIGMAGIVYAIISGPEHGWASATVLVAAG IGVAALAAFVRWELHVPHPMLDMGLFRNRRFNGAISGGLLVAFGMGGSVFLLTQQLQLVL GYDPLEAGLRTAPLALVVVALNVAGLGAKLLEKLGIAMTIAVGMTLNAVGLAMVAVLGTP DRGFGGMLACLLVMGGGIAPAMPAMANAIMTSIPAEKAGAGAAVQGTVNQFGSGLGVAIL GAVLNSRFAALLPIGLGAGAAGSLHEALLQARTPALQAQVRDAFAGGVRASELIGALAVV LGGMLAGMLLRRAARSEAHQAAWARPTIRLEAAPAPFTVDLR
>rifamycin resistance transporter [RifP] ATGCACGCCACGGCGGCGGTGACCGAAACCCGGAATCCACGGCGCTGGCTGATTCTGGCC GTCATCTCGCTGGCCCAGCTGGTCGTCCTGGTCGACAACACGGTTTTGAACCTGGCCATC CCCAAGCTCACCGAAGATCTCGGCGCCACCACCGCCGATATCCAATGGATGATCAACGCC TACGCCCTCGTCCAATCCGGGCTGCTTTTGACGGCCGGCAGTTTCAGTGACCGGTACGGC CGGAAACGGTCGTTGCTCGCCGGGCTCCTGCTGTTCGGCGTGGGTTCGCTGGCCGCGGCG TTCAGCCTGTCGTCCGGGCAGCTGATCGCCGCGCGGGCCGGGATGGGCATCGGCGGTGCG CTGCTGACCACCACCACGCTGGCCGTCGTCATGCAGGTCTTCGACGAAAAAGAACTGCCG AAGGCGATCGGGCTGTGGAGCGCGGTCAGCTCCTTCGGCTACGCCAGCGGCCCGCTGATC GGCGGCGCGCTGCTCGCGCACTTCTGGTGGGGCTCGATCTTCCTCATCAACATCCCGGTG GCGCTGCTCGGCTGCGTCGCCGTGGCGAAACTCGTGCCGGAATCCAAGGACCCGCAAGGC GCCCGGCCCGATCTGGTCGGTGCCGCGCTCTCCACGATCGGCATGGCCGGGATCGTCTAC GCGATCATCTCCGGCCCGGAGCACGGCTGGGCCTCGGCCACCGTCCTGGTGGCGGCCGGC ATCGGCGTGGCCGCGCTGGCCGCGTTCGTCCGGTGGGAGCTGCACGTGCCGCACCCCATG CTCGACATGGGTTTATTCCGCAACCGCCGGTTCAACGGCGCGATCTCCGGCGGCCTGCTG GTCGCCTTCGGGATGGGCGGCTCGGTCTTCCTGCTGACGCAGCAACTGCAGCTCGTGCTC GGCTACGACCCCCTGGAGGCCGGGCTCCGGACGGCTCCGCTCGCGCTGGTGGTCGTCGCG CTGAACGTCGCCGGGCTCGGCGCGAAGCTGCTCGAGAAGCTGGGCATCGCCATGACGATC GCCGTCGGGATGACGCTGAACGCCGTCGGGCTCGCCATGGTGGCCGTGCTGGGCACGCCC GATCGCGGGTTCGGCGGAATGCTGGCCTGCCTGCTCGTCATGGGTGGCGGTATCGCGCCG GCCATGCCCGCCATGGCCAACGCCATCATGACCTCGATCCCGGCCGAGAAGGCGGGGGCG GGAGCCGCGGTGCAGGGCACCGTGAACCAGTTCGGCAGCGGGCTCGGCGTCGCCATCCTC GGCGCCGTGCTCAACTCGCGGTTCGCCGCGCTGCTGCCGATCGGCCTCGGTGCCGGCGCC GCCGGTTCGCTGCACGAAGCGCTGCTCCAGGCGCGGACCCCCGCACTGCAGGCGCAGGTG CGCGACGCCTTCGCCGGCGGCGTGCGCGCCAGCGAGCTGATCGGGGCGCTGGCCGTGGTC CTCGGCGGCATGCTCGCCGGCATGCTGCTGCGCCGGGCGGCCCGGTCGGAGGCGCACCAG GCGGCCTGGGCCCGCCCCACGATCAGGCTGGAAGCGGCCCCTGCCCCCTTTACCGTTGAC CTCCGGTGA
Feature
| BLASTP Database:UniProtKB:2011_09 |
|
|---|---|
| InterPro Database:interpro:38.0 |
IPR001411 Tetracycline resistance protein TetB/drug resistance transporter (Family)
IPR011701 Major facilitator superfamily (Family)
IPR016196 Major facilitator superfamily domain, general substrate transporter (Domain)
IPR020846 Major facilitator superfamily domain (Domain)
|
| SignalP |  ![[1-31] 0.471 Signal](../../img/R.gif "[1-31] 0.471 Signal"){kind=small} |
| TMHMM | ![[17-39] Transmembrane (i-o)](../../img/C.gif "[17-39] Transmembrane (i-o)"){kind=small} ![[54-76] Transmembrane (o-i)](../../img/G.gif "[54-76] Transmembrane (o-i)"){kind=small} |
![[21-45] 1.9000006847787e-07 PR01036](../../img/F.gif "[21-45] 1.9000006847787e-07 PR01036"){kind=small}
![[23-416] 1.80000000000002e-51 PF07690](../../img/H.gif "[23-416] 1.80000000000002e-51 PF07690"){kind=small}
![[1-495] 1.3000049540733e-69 SSF103473](../../img/B.gif "[1-495] 1.3000049540733e-69 SSF103473"){kind=small}
![[18-494] PS50850](../../img/M.gif "[18-494] PS50850"){kind=small}
