Rifam_00630 Rifam_00630   last last

Rifam_00640 : CDS information

close this sectionLocation

Organism
StrainS699
Entry nameRifamycin
Contig
Start / Stop / Direction109,375 / 109,528 / + [in whole cluster]
109,375 / 109,528 / + [in contig]
Location109375..109528 [in whole cluster]
109375..109528 [in contig]
TypeCDS
Length154 bp (50 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.1 general function
Productputative DNA-directed RNA polymerase subunit beta'(fragment)
Product (GenBank)RpoC
Gene
Gene (GenBank)rpoC
EC number
Keyword
Note
Note (GenBank)
  • DNA-dependent RNA polymerase beta'-subunit
Reference
ACC
comment
[PMID: 9512878, 9497318, 11278540]UniProtに登録されているこれらの論文には、図表を含め記述がない。
Related Reference
ACC
P0A674
PmId
[8031050] The rpoB gene of Mycobacterium tuberculosis. (Antimicrob Agents Chemother. , 1994)
comment
23rd, 98%, 3e-23
Mycobacterium tuberculosis_rpoC
DNA-directed RNA polymerase subunit beta'(EC 2.7.7.6)

RNA polymeraseのbeta subunitをコードするrpoBC部分の分離。
E.coli rpoBC operonに似た構成。

close this sectionSequence

selected fasta
>putative DNA-directed RNA polymerase subunit beta'(fragment) [RpoC]
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKI-
selected fasta
>putative DNA-directed RNA polymerase subunit beta'(fragment) [RpoC]
GTGCTGGACGTCAACTTTTTCGATGAGCTCCGCATTGGTCTCGCCACGGCCGACGACATC
CGTCAGTGGTCGTACGGCGAGGTCAAGAAGCCGGAGACCATCAACTACCGGACGCTCAAG
CCCGAGAAGGACGGCCTCTTCTGCGAGAAGATCT

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro
Database:interpro:38.0
IPR007080 RNA polymerase Rpb1, domain 1 (Domain)
[6-51] 2e-13 PF04997
PF04997   RNA_pol_Rpb1_1
SignalP
[1-17] 0.132 Signal
Eukaryota   
TMHMM No significant hit
Rifam_00630 Rifam_00630   last last
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