Rubra_00250 : CDS information

Location

Organism	Streptomyces achromogenes var. rubradiris
Strain	NRRL 3061 (=NBRC 14000)
Entry name	Rubradirin
Contig	AJ871581
Start / Stop / Direction	44,495 / 45,292 / + [in whole cluster] 44,495 / 45,292 / + [in contig]
Location	44495..45292 [in whole cluster] 44495..45292 [in contig]
Type	CDS
Length	798 bp (265 aa)

Annotation

Category	5.4 hypothetical protein
Product	hypothetical protein
Product (GenBank)	hypothetical protein
Gene
Gene (GenBank)	rubF1
EC number
Keyword
Note
Note (GenBank)
Reference	ACC Q2PC65 PmId [18080113] Biosynthesis of rubradirin as an ansamycin antibiotic from Streptomyces achromogenes var. rubradiris NRRL3061. (Arch Microbiol. , 2008) comment Rubradirin生合成clusterの報告。配列比較からのProposed function RubF1(265aa): SnoK 本文に詳細記載なし --- SnoK(Q9RN60) blast search Rubra_00250 1e-06 47.8 26.91 <this ORF Rubra_00200 1e-04 41.2 25.31
Related Reference	ACC Q2PC70 NITE Rubra_00200 PmId [18080113] Biosynthesis of rubradirin as an ansamycin antibiotic from Streptomyces achromogenes var. rubradiris NRRL3061. (Arch Microbiol. , 2008) comment 2nd, id63%, 2e-94 Rubradirin生合成cluster内homolog ORF8(280aa): SnoK 本文に詳細記載なし

Sequence

>hypothetical protein [hypothetical protein]
MPDSIDSRTLSVRRMLTRDQLQEFAERGYIVIRDVVPPDILAAANAAVDDQLRMHPPQEG
HAGPHFMFPKWEEEPALAALLRDTQAFSLAEELTGDGAMEYPWQTQIAMTYPPYTDDRGM
PHIDGGMRRKADEPPRTFTVLAGFFLTDQDDDDTGNLYVWPGTHRAHAKYFREHGPDAFT
SYPDIKLPEREQVRGRAGDMLLKHYMVGHNVGSNTSDSVRRTVYFRLKVRGHDATWRQIL
QNPWHDFTPLRPLVSAFEENDDSGR

>hypothetical protein [hypothetical protein]
ATGCCTGACAGCATCGACTCGCGGACGCTGAGTGTGCGGCGGATGTTGACCCGTGACCAG
CTGCAGGAGTTCGCCGAACGCGGCTACATCGTGATCCGGGACGTCGTGCCTCCGGACATC
CTGGCCGCGGCCAACGCGGCGGTGGACGACCAGCTGCGCATGCATCCGCCCCAGGAAGGC
CACGCCGGACCGCACTTCATGTTCCCCAAGTGGGAGGAGGAGCCGGCACTCGCGGCGCTC
CTGCGTGACACCCAGGCCTTCTCGCTCGCCGAAGAACTCACCGGTGACGGCGCCATGGAA
TACCCGTGGCAGACGCAGATAGCGATGACTTATCCGCCCTACACCGACGACCGGGGAATG
CCGCACATCGACGGCGGCATGCGCCGGAAGGCCGACGAACCCCCGCGGACCTTCACCGTG
CTCGCCGGCTTCTTCCTCACCGACCAGGACGACGACGACACCGGGAACCTCTACGTCTGG
CCGGGAACGCACCGCGCTCACGCGAAGTACTTCCGTGAGCACGGGCCCGACGCGTTCACC
TCCTACCCGGACATCAAGCTGCCCGAACGGGAGCAGGTACGCGGCCGCGCCGGAGACATG
CTGCTGAAGCACTACATGGTCGGCCACAACGTCGGCAGCAACACGTCCGACTCCGTTCGG
CGCACGGTCTACTTCCGGCTCAAGGTCCGCGGGCACGACGCGACCTGGCGTCAGATCCTC
CAGAATCCCTGGCACGATTTCACTCCGCTGCGGCCGCTGGTGTCCGCTTTCGAAGAAAAC
GACGATTCAGGCCGATAG

Feature

BLASTP Database:UniProtKB:2011_09	show BLAST table
InterPro Database:interpro:38.0	IPR008775 Phytanoyl-CoA dioxygenase (Family) PF05721 PhyH
SignalP	No significant hit
TMHMM	No significant hit

Rubra_00240 Rubra_00260