Gelda_00160 Gelda_00160   Gelda_00140 Gelda_00140

Gelda_00150 : CDS information

close this sectionLocation

Organism
Strain17997
Entry nameGeldanamycin
Contig
Start / Stop / Direction7,666 / 6,845 / - [in whole cluster]
1,236 / 2,057 / + [in contig]
Locationcomplement(6845..7666) [in whole cluster]
1236..2057 [in contig]
TypeCDS
Length822 bp (273 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)putative integral-membrane protein
Gene
Gene (GenBank)gndM
EC number
Keyword
Note
Note (GenBank)
  • GdnM
Reference
ACC
comment
geldanamycin生合成に関連するAHBA生合成clusterに隣接するORF。
関連する論文なし。
Related Reference
ACC
Q49BB7
NITE
Gelda2_00320
comment
Blast id84%, 2e-84
geldanamycin clusterを持つNRRL 3602株のORF。

gdm PKS clusterから30kb以上離れたところにあるAHBA関連clusterに隣接するORF。
UniProtで登録されている[PMID:16085885]で同定されたという6ORFsにこのORFは含まれない。

close this sectionSequence

selected fasta
>hypothetical protein [putative integral-membrane protein]
MGSCGGGPRAALVIGVMKIEPSLRIPATAGTMAAMSAGPPFRLARAAVFAAMCVVVTALG
HVLMSGDRLPVWAVAAAFAGTAAGAWWVAGREHGALAVTGATVVAQFGLHMAFRFAETAV
APAAGSAMGDGMSGMRGGMGAAPMSGAAMGHMHDGMGHMRHGADAISSAAPSMSHLPWPW
AGPGGAGMATAHLLAALICGLWLWRGERAAFRLGRALAALLFVPLVLALRILGAGVTPPP
AWTSAPAVARRPRGVLLRHVILRRGPPRRFAIR
selected fasta
>hypothetical protein [putative integral-membrane protein]
ATGGGGTCATGTGGCGGCGGTCCACGAGCCGCGCTTGTCATCGGCGTGATGAAGATTGAG
CCATCGTTACGCATACCGGCAACGGCTGGCACCATGGCTGCCATGTCCGCCGGGCCGCCC
TTCCGTCTCGCACGAGCCGCCGTGTTCGCGGCGATGTGCGTCGTGGTGACGGCGCTCGGA
CACGTGCTGATGTCCGGTGACAGGCTGCCGGTGTGGGCCGTGGCCGCCGCCTTCGCCGGA
ACGGCGGCCGGTGCGTGGTGGGTTGCGGGGCGGGAGCACGGTGCGCTGGCCGTGACCGGG
GCGACCGTGGTCGCGCAATTCGGCCTCCATATGGCCTTCCGGTTCGCGGAGACGGCAGTC
GCCCCAGCGGCGGGAAGCGCCATGGGTGACGGGATGTCCGGTATGCGGGGCGGCATGGGC
GCCGCCCCGATGAGCGGCGCCGCCATGGGTCATATGCACGATGGCATGGGCCATATGCGC
CATGGCGCGGACGCGATCTCCTCCGCCGCGCCGTCCATGAGTCATCTGCCGTGGCCCTGG
GCGGGTCCGGGCGGGGCGGGCATGGCCACGGCCCACCTGCTCGCCGCCCTGATCTGCGGG
CTGTGGCTGTGGCGCGGCGAACGGGCCGCCTTCCGGCTCGGCCGCGCGCTCGCGGCCCTG
CTGTTCGTCCCGCTCGTCCTCGCCCTGCGCATCCTGGGCGCGGGTGTCACTCCGCCGCCC
GCATGGACCTCCGCACCGGCCGTCGCCCGCCGGCCGCGCGGAGTCCTGCTGCGGCACGTC
ATCCTGCGCAGAGGGCCACCGAGGCGGTTCGCCATCCGCTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro No significant hit
SignalP No significant hit
TMHMM
[41-63] Transmembrane (o-i) [70-89] Transmembrane (i-o) [182-204] Transmembrane (o-i) [211-233] Transmembrane (i-o)
Transmembrane 4   
Gelda_00160 Gelda_00160   Gelda_00140 Gelda_00140
Page top