Herb_00150 Herb_00150   Herb_00170 Herb_00170

Herb_00160 : CDS information

close this sectionLocation

Organism
StrainAM 3672
Entry nameHerbimycin A
Contig
Start / Stop / Direction26,795 / 26,325 / - [in whole cluster]
26,795 / 26,325 / - [in contig]
Locationcomplement(26325..26795) [in whole cluster]
complement(26325..26795) [in contig]
TypeCDS
Length471 bp (156 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)HbmX
Gene
Gene (GenBank)hbmX
EC number
Keyword
Note
Note (GenBank)
  • similar to GdmX
Reference
ACC
PmId
[16085885] Insights into the biosynthesis of the benzoquinone ansamycins geldanamycin and herbimycin, obtained by gene sequencing and disruption. (Appl Environ Microbiol. , 2005)
comment
herbimycin生合成系gene clusterのクローニングを行い、同じbenzoquinone ansamycin系のgeldanamycin のgene clusterと比較し、一部の遺伝子欠損株を作成してその生合成における関与を調べた文献。

hbmX(471bp):conserved JadX and MmyY homolog
hbmX自体の機能実験は無し。

close this sectionSequence

selected fasta
>hypothetical protein [HbmX]
MTATADYDSLARRLQALEDKEALRALMIRGWRALDRKDWQTWIECWAEDAVLEFGPWEKI
HGKEAVRAKVEEVESPYASMQHHILNMHVDVAGDRATGIGYMWFVAVTEPGSTSSPYSMG
GPYDWEFRRGPDGWLLVRQRLGVWWTDGEDTLRAFA
selected fasta
>hypothetical protein [HbmX]
ATGACAGCGACCGCCGACTACGACAGCCTGGCCCGCAGACTCCAGGCACTGGAGGACAAG
GAAGCCCTGCGCGCCCTCATGATCCGCGGATGGCGGGCGCTGGACCGCAAGGACTGGCAG
ACCTGGATCGAATGCTGGGCCGAGGACGCGGTGCTGGAGTTCGGGCCGTGGGAGAAGATC
CACGGAAAAGAGGCGGTCCGGGCCAAGGTGGAGGAGGTGGAATCACCCTACGCGAGCATG
CAGCATCACATCCTCAACATGCACGTCGACGTGGCGGGCGACCGGGCGACGGGGATCGGC
TACATGTGGTTCGTCGCCGTCACCGAGCCCGGGAGCACCTCCTCCCCCTACTCCATGGGC
GGCCCCTACGACTGGGAATTCCGCCGGGGCCCGGACGGCTGGCTCCTGGTCCGCCAGCGG
CTCGGTGTCTGGTGGACCGACGGCGAGGACACCTTGAGGGCCTTCGCGTAG

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro
Database:interpro:38.0 		No significant hit
SignalP
[1-33] 0.125 Signal
Bacteria, Gram-negative   
TMHMM No significant hit
Herb_00150 Herb_00150   Herb_00170 Herb_00170
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