Lasal_00010 Lasal_00010   Lasal_00030 Lasal_00030

Lasal_00020 : CDS information

close this sectionLocation

Organism
StrainATCC 35851
Entry nameLasalocid
Contig
Start / Stop / Direction1,936 / 1,403 / - [in whole cluster]
1,936 / 1,403 / - [in contig]
Locationcomplement(1403..1936) [in whole cluster]
complement(1403..1936) [in contig]
TypeCDS
Length534 bp (177 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)hypothetical protein
Gene
Gene (GenBank)
EC number
Keyword
Note
  • It is supposed that this ORF is not involved in lasalocid biosynthesis.
Note (GenBank)
  • orf2
Reference
ACC
PmId
[19129623] Identification of a gene cluster of polyether antibiotic lasalocid from Streptomyces lasaliensis. (Biosci Biotechnol Biochem. , 2009)
comment
GenBank,Uniprotでは、ATCC31180と登録されている。

S. lasaliensis ATCC35851におけるLasalocid生合成gene clusterの報告。

orf2: unknown
homolog: conserved hypothetical protein_S.ambofaciens ATCC 23877

lsd1のすぐ上流にあるorf1,orf2はlasalocid生合成に関係しそうにないと述べている。
機能解析はされていない。

株違いS. lasaliensis ATCC31180(GenBank,Uniprotでは、NRRL3382Rと登録されている)には、相同配列はない。

close this sectionSequence

selected fasta
>hypothetical protein [hypothetical protein]
MRTVELLVDDAADQVVREAWRRLADAGLPSQARHGSPTNSPHLTLAACPELTGPIRWELA
EVAAALPLPVRCTGLIRFERPTSVLAWALAPDPALTALHRRVWEAVASDSPPETLNPLHT
PGRWSPHITLGRTRRAGAFADRRIPGLLPMPPQSFLLTTLRSFDTHTGTLEVLEPRG
selected fasta
>hypothetical protein [hypothetical protein]
GTGCGTACGGTCGAGCTCCTGGTGGATGACGCGGCGGACCAGGTGGTCCGGGAGGCCTGG
CGGCGGCTGGCGGACGCGGGGCTGCCCAGTCAGGCCCGGCACGGCTCACCCACCAACAGC
CCGCACCTGACCCTGGCCGCCTGTCCGGAGCTGACCGGTCCGATCCGCTGGGAGCTCGCC
GAGGTGGCGGCCGCCCTCCCGCTCCCGGTGCGGTGCACGGGACTCATCCGCTTCGAGCGA
CCCACCTCCGTACTCGCCTGGGCGCTCGCACCGGACCCGGCGCTGACCGCCCTGCACCGC
CGGGTGTGGGAGGCGGTGGCCTCCGACAGTCCGCCCGAGACCCTCAACCCCCTGCACACG
CCGGGACGGTGGAGTCCGCACATCACCCTCGGCCGCACCCGGCGTGCGGGCGCCTTCGCC
GACCGGCGGATCCCCGGTCTGCTGCCCATGCCGCCGCAGTCCTTCCTGCTCACGACTCTG
CGCAGCTTCGACACCCACACCGGCACCCTGGAGGTGCTGGAGCCCCGCGGGTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro
Database:interpro:38.0
IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase (Domain)
[4-132] 3.00000067992871e-08 SSF55144
SSF55144   Cyc_nuc_Pdiester
SignalP No significant hit
TMHMM No significant hit
Lasal_00010 Lasal_00010   Lasal_00030 Lasal_00030
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