Ncarz_00210 : CDS information

Location

Organism	Streptomyces carzinostaticus
Strain	ATCC 15944
Entry name	Neocarzinostatin
Contig	AY117439
Start / Stop / Direction	39,459 / 40,076 / + [in whole cluster] 39,459 / 40,076 / + [in contig]
Location	39459..40076 [in whole cluster] 39459..40076 [in contig]
Type	CDS
Length	618 bp (205 aa)

Annotation

Category	4.1 transcriptional regulator
Product	putative TetR family transcriptional regulator
Product (GenBank)	transcriptional regulator
Gene	ncsR4
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
Reference	ACC Q84HB3 PmId [15797213] The neocarzinostatin biosynthetic gene cluster from Streptomyces carzinostaticus ATCC 15944 involving two iterative type I polyketide synthases. (Chem Biol. , 2005) comment Neocarzinostatin生合成遺伝子クラスターの報告。 ncsR4: TetR/AcrR family, transcriptional regulator このORFについて機能解析はされていない。
Family/Domain	FD IPR001647 comment [IPR001647] Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal (Domain)

Sequence

>putative TetR family transcriptional regulator [transcriptional regulator]
MIRDAHPYHRPGLRSALIEAGLKRARKGGADALGLREITRSVGVTPNAAYRHFADRRELV
LAVAAQAQDKLAQAMLDRMQDVVDQADPAAHAVQKLRGVGLGYIHFALSEPGWFELAILL
QEEPSGESEARVPPPYQLLLDALDGMVEAGALTPERRVDAEWVCWSGVHGFADLATRGPL
RRQDRTVVDKLAVHVVNTVISELKA

>putative TetR family transcriptional regulator [transcriptional regulator]
ATGATCCGTGACGCGCATCCCTATCACCGCCCGGGCCTGAGGTCCGCGCTCATCGAAGCC
GGTCTGAAGCGTGCCCGGAAGGGGGGCGCCGACGCACTCGGGCTCCGGGAGATCACCCGG
TCCGTGGGAGTCACGCCGAACGCCGCCTACCGGCATTTCGCAGACCGGCGCGAGCTCGTG
CTCGCCGTCGCCGCCCAGGCACAGGACAAACTGGCGCAGGCCATGCTCGACCGCATGCAG
GACGTCGTGGACCAGGCGGACCCCGCTGCCCACGCGGTGCAAAAGCTGCGCGGAGTCGGC
CTCGGCTACATCCACTTCGCACTGTCCGAACCGGGTTGGTTCGAGCTGGCGATCCTGCTC
CAAGAAGAGCCCAGCGGCGAGTCCGAGGCGCGTGTACCACCGCCCTACCAACTCCTGCTC
GACGCCCTCGACGGCATGGTCGAGGCAGGCGCGTTGACTCCCGAGAGACGAGTGGACGCC
GAGTGGGTCTGCTGGTCGGGGGTCCACGGATTCGCCGATCTGGCGACCCGCGGCCCGTTG
CGCCGACAGGACCGTACAGTCGTGGACAAACTCGCCGTCCACGTCGTGAACACCGTCATC
AGCGAACTCAAAGCCTGA

Feature

BLASTP Database:UniProtKB:2011_09	show BLAST table
InterPro Database:interpro:38.0	IPR001647 DNA-binding HTH domain, TetR-type (Domain) PF00440 TetR_N PS50977 HTH_TETR_2 IPR009057 Homeodomain-like (Domain) SSF46689 Homeodomain_like IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal (Domain) SSF48498 TetR_like_C IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal (Domain) G3DSA:1.10.357.10 TetR_C IPR025996 WHG domain (Domain) PF13305 WHG
SignalP	No significant hit
TMHMM	No significant hit

Ncarz_00200 Ncarz_00220