Pact_00250 Pact_00250   Pact_00270 Pact_00270

Pact_00260 : CDS information

close this sectionLocation

Organism
StrainATCC 27456 (=NBRC 13433)
Entry namePactamycin
Contig
Start / Stop / Direction38,551 / 39,366 / + [in whole cluster]
38,551 / 39,366 / + [in contig]
Location38551..39366 [in whole cluster]
38551..39366 [in contig]
TypeCDS
Length816 bp (271 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)hypothetical protein
Geneorf2
ptmW
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
  • orf2
Reference
ACC
PmId
[17827660] Cloning of the pactamycin biosynthetic gene cluster and characterization of a crucial glycosyltransferase prior to a unique cyclopentane ring formation. (J Antibiot (Tokyo). , 2007)
[19670201] Deciphering pactamycin biosynthesis and engineered production of new pactamycin analogues. (Chembiochem. , 2009)
comment
[PMID:17827660]
Pactamycin生合成遺伝子クラスターの報告。

orf1とPctAの間に存在する1926bpのnon-coding regionが、pct clusterの境界(outside)になるかもしれないと述べており、これと同様の理由でOrf2の前が境界だと推定している。遺伝子欠損株によるPactamycinの発現確認はしていない。


[PMID:19670201]
S.pactum ATCC27456のPactamycin生合成遺伝子クラスターの報告。

PtmW: hypothetical protein

PtmWの機能解析はされていない。この株ではPtmA-Zがpactamaycin生合成遺伝子だとしており、このPtmWは生合成遺伝子だとしている。

close this sectionSequence

selected fasta
>hypothetical protein [hypothetical protein]
MSLRGRGESIGREERDMVHEQSGGTPAEHLDGLLARAQNGFEIDDTVIIRLRDALMHQTE
LRSCRQCNEPPAPRGYTTFRHIFLLPDGSSVVLWELQHSAGPGDGLQHELYADEEALLRA
ERRAHLRTGGTSWAEVTLEGLRPEEVLRTPLPVETVRAYVADNSADHARRVLRRAENEDR
PGKDVERLLETAFAHDIALAPKPRRRSGGEDTTWCRFYEHAFLLAGGDEITLWELEHNLT
SDGRLVCEVYLDEGAAEMAADRRARARGVEL
selected fasta
>hypothetical protein [hypothetical protein]
GTGTCGCTTCGGGGGCGCGGCGAGTCGATTGGCCGGGAGGAGAGAGACATGGTGCACGAA
CAGTCCGGCGGTACGCCCGCCGAGCACCTCGACGGGCTGCTGGCCCGCGCCCAGAACGGG
TTCGAGATCGACGATACGGTCATCATCCGGCTGCGGGACGCTCTGATGCACCAGACCGAG
CTGCGTTCCTGCCGCCAGTGCAACGAGCCGCCGGCTCCCCGGGGTTACACCACCTTCCGG
CACATCTTCCTGCTCCCGGACGGCAGCAGCGTGGTGCTGTGGGAGCTCCAGCACAGCGCC
GGCCCGGGGGACGGCCTCCAGCACGAGCTGTACGCCGACGAGGAGGCGCTGCTGCGGGCG
GAGCGGCGCGCGCACCTGCGGACCGGCGGCACCAGCTGGGCGGAGGTCACCCTGGAGGGC
CTCCGTCCCGAGGAGGTGCTGCGTACCCCGCTGCCGGTGGAGACGGTACGGGCGTACGTG
GCGGACAACTCCGCCGACCACGCGCGGCGGGTGCTGCGCCGGGCGGAGAACGAGGACCGG
CCGGGCAAGGACGTCGAGCGGCTGCTGGAGACGGCGTTCGCGCACGACATCGCCCTCGCC
CCCAAGCCCCGGCGGCGGTCGGGCGGCGAGGACACCACCTGGTGCCGCTTCTACGAGCAC
GCGTTCCTGCTGGCCGGCGGGGACGAGATCACCCTCTGGGAGCTGGAGCACAACCTGACC
AGCGACGGACGGCTGGTCTGCGAGGTCTACCTCGACGAGGGGGCGGCCGAGATGGCGGCG
GACCGGCGCGCCCGGGCCCGCGGCGTCGAGCTCTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro No significant hit
SignalP No significant hit
TMHMM No significant hit
Pact_00250 Pact_00250   Pact_00270 Pact_00270
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