Rimoc_00070
Rimoc_00080 : CDS information
Location
| Organism | Streptomyces diastaticus |
|---|---|
| Strain | 108 |
| Entry name | Rimocidin |
| Contig | AY442225 |
| Start / Stop / Direction | 9,397 / 14,610 / + [in whole cluster] 9,397 / 14,610 / + [in contig] |
| Location | 9397..14610 [in whole cluster] 9397..14610 [in contig] |
| Type | CDS |
| Length | 5,214 bp (1,737 aa) |
Annotation
| Category | 1.1 PKS |
|---|---|
| Product | polyketide synthase |
| Product (GenBank) | RimA |
| Gene | |
| Gene (GenBank) | rimA |
| EC number | |
| Keyword | |
| Note | |
| Note (GenBank) |
|
| Reference |
|
PKS/NRPS Module
| 0 |  | acetyl-CoA for CE-108 butyryl-CoA for Rimocidin |
Sequence
>polyketide synthase [RimA] MVPVHTADYVIQPPTDAAEVRGGHTLPEVFETASRAAPDAVAIVDGDRSRTWAQWRADVR ALARGLQESGVGPGDVVAVRLPNSWEFQTLHLAVAAVGAVLLPVHEGTPTAEVHALLTRA EPVLLVLSASGSEGTATARSLLESVPTLRGVLLAGASEAECEEPGIGALDGLRAAWTGSE PRPVHLTPDMPLALIPSSGTTSARPKLCVHTHGGLLANTAAVVADAADAFGGTVLTACPM THLFGLQSLHTALFAARTQVLLTGWDVDRFLELAREHNPRVVFAVPAQLRDIVARLARAG EPAGFAPHQVRTAGAALAPALAAQIRAALDCEPVVVWGMSEIGTGTATRAHHPDGSVGEP VDGVRVRVVDEHGAECAAGETGELQYQGPAMFRGYFREPELTRSALTDDGWLRTGDIAAI DADGVVVLHGRAAEVIATGGRKFGATEIESLLAELAGLGPLAVAGAPDDRLGEYPCLVVT DRADRTIGLTEVTAFLRRRGLADHKIPLELVTVRELPFTPAGKLDRRALKEQLRTGLEAT PVAARLGAVPPETAEEALELVRDCVGQVLGSSGDPAGPAVGAPEFPDTEFRRLGLDSVLA VRLRNLLREETGLSLPVTLAFDFPTPRAVAHALAEQNDPASAAASGKTAEEARRFPADEA DPVAIVAMACRLPGGADSPDALWELLAGGTDAMRPFPDDRGWDLDRLFDEDPDRPGTCYA REGGFLPGAGDFDAGFFGLSDHEATATDPQQRLLLVAAWETFERAGIDPASLKGTRTGVF TGAMERGYGALASAVPSEWESTLTTGAANSAISGRIAYTYGLEGPALTVDTASSSSLVAL HLACRSLRSGETDLALAGGVTVMATPAPFTHFARLRALATDSRAKAYADTANGSAWAEGA GLLLLERLSDARRNGHRVLALVRGSAVNQDGASNGLTAPSGPAQQRVIRQALADAGLTPR DVDAVEGHGTGTPLGDPIEAQALMATYGQERPEGRPLWLGSVKSNLGHTQAAAGVVGVIK TVLALGRGVLPRTLHVETPSTKVDWSAGAVRLLTEAQPWPQESGHTRRAGVSSFGLTGTN AHVILEEAPDGTQSAPGSEPADDTAVPWVLSARSRTALREQARRLAEHVTAHPGLRTQDI AHALATTRTRHRHRAVVSGSDRDRMLSATAAFGRGERAADVTPLDSAPGGLAFVFSGQGG QHPGMGRGAAEAFPVFGEALREVCDTLDPLLARPLTSVMWADADSEEATLLHNAEFSQPS LFALQVALYRLYESWGMAPDRLAGHSAGEIAAAHVTGILTLQDACALVASRGRLISSLPV GGATVAVRISEDEVRGWLAEETTGSVSIAAVNGPHSLVLSGAEAPLIALTDRLRDAGHKT HRIPMRVAAHSPLMDPILGEFRAVVRTLAYGTPTIPLVSTVTGRPLTDEEARDPEHWVRH VRRPVRFKDAIGRLREERVTGFLELGAEPLLTPMIDECLEAAGPQHGTAVVPSLSSGVPD RQILLSAAARVHTHGAPVDWDAVLPGARPVDLPTYAFQRRRFWLAAGPGAAAEAGFVGAA IGAGAPAADAEEPSGLEARLAGLEDAEQDAYVRSLVLAETSAVLGGQEPLDSEGTHTFKE MGINSVNAVELRNRLIAATDLRLPATLVYDHPTPNAVVRLVRERLARPATAARDVDSVVA ELESLLTAGAEVSAEAVARLKAMAAGRDGTTDTGSGGPLDLTSASDEDLFRLMDAEH
>polyketide synthase [RimA] ATGGTGCCCGTCCACACAGCTGACTACGTGATCCAGCCGCCCACCGACGCGGCGGAGGTA CGGGGCGGCCACACGCTGCCCGAGGTGTTCGAGACCGCGTCGAGGGCCGCCCCCGACGCG GTGGCCATCGTGGACGGGGACCGTTCGCGGACCTGGGCGCAGTGGCGGGCGGACGTCCGC GCGCTGGCCCGTGGCCTCCAGGAATCGGGCGTCGGGCCCGGTGACGTGGTGGCGGTGCGG CTGCCGAACAGCTGGGAGTTCCAGACCCTGCACCTGGCCGTCGCGGCCGTCGGCGCCGTA CTGCTGCCCGTCCACGAGGGCACCCCGACCGCGGAGGTCCACGCGCTGCTGACCCGCGCG GAACCCGTACTCCTCGTCCTGTCGGCTTCCGGGAGCGAGGGCACGGCAACGGCCCGCTCG CTCCTGGAGAGCGTGCCGACGCTGCGCGGCGTGCTGCTGGCCGGGGCGTCGGAGGCGGAG TGCGAGGAGCCGGGGATCGGGGCGCTGGACGGGTTGCGGGCAGCCTGGACGGGCAGCGAG CCCCGGCCGGTGCACCTCACCCCCGACATGCCGCTCGCCCTGATCCCCTCGTCCGGCACC ACCTCGGCGCGGCCCAAGCTGTGCGTGCACACCCACGGCGGCCTGCTGGCGAACACCGCG GCCGTCGTGGCCGATGCCGCCGACGCCTTCGGCGGCACGGTCCTGACCGCCTGCCCGATG ACCCACCTGTTCGGGCTCCAGTCCCTGCACACGGCGCTGTTCGCCGCCCGGACGCAGGTC CTGCTCACCGGCTGGGACGTGGACCGCTTCCTGGAGCTGGCGCGGGAGCACAACCCCCGC GTCGTCTTCGCCGTACCCGCCCAACTGCGGGACATCGTCGCGCGACTCGCCAGGGCGGGC GAGCCGGCGGGCTTCGCGCCGCACCAGGTGCGTACGGCGGGCGCCGCCCTCGCACCCGCG CTCGCCGCACAGATACGCGCCGCCCTCGACTGCGAACCGGTCGTGGTGTGGGGCATGTCC GAGATCGGCACCGGCACCGCAACCCGGGCCCACCACCCCGACGGCAGCGTGGGAGAACCG GTCGACGGCGTGCGCGTACGGGTCGTCGACGAGCACGGCGCGGAGTGCGCGGCGGGGGAG ACGGGCGAGCTCCAGTACCAGGGCCCGGCGATGTTCCGCGGCTATTTCCGCGAGCCGGAG CTGACGCGCTCGGCCCTCACCGACGACGGCTGGCTGCGGACCGGCGACATCGCCGCCATC GACGCGGACGGCGTGGTCGTCCTGCACGGCCGGGCGGCCGAAGTGATCGCCACCGGAGGC CGGAAGTTCGGCGCCACCGAAATCGAGAGCCTGCTCGCGGAGCTCGCGGGCCTGGGCCCG CTGGCCGTGGCGGGGGCGCCGGACGACCGGCTCGGCGAGTACCCGTGCCTGGTCGTGACC GACCGCGCGGACCGTACGATCGGGCTGACCGAGGTGACCGCGTTCCTGCGCCGGCGGGGA CTCGCCGACCACAAGATCCCCCTCGAACTGGTCACCGTGCGCGAGCTGCCCTTCACCCCC GCGGGGAAGCTCGACCGCAGGGCACTCAAGGAGCAGCTGCGCACCGGCCTGGAAGCGACG CCCGTGGCGGCCCGTCTCGGCGCGGTCCCGCCGGAGACGGCCGAAGAGGCGCTGGAACTG GTACGCGACTGCGTCGGCCAGGTCCTCGGCAGCAGCGGCGACCCGGCCGGCCCCGCCGTC GGTGCGCCGGAATTCCCCGACACCGAATTCCGCCGGCTCGGCCTCGACTCCGTCCTCGCG GTGCGGCTGCGCAACCTGCTGCGGGAGGAGACCGGGCTGTCCCTCCCGGTCACGCTGGCC TTCGACTTCCCGACGCCGCGGGCCGTGGCGCACGCACTGGCCGAGCAGAACGACCCGGCT TCGGCGGCGGCATCGGGGAAGACGGCGGAGGAGGCGCGGAGGTTCCCGGCCGACGAGGCC GATCCGGTGGCGATCGTCGCCATGGCCTGCCGCCTGCCGGGCGGCGCCGACTCTCCCGAC GCCCTGTGGGAGCTGCTGGCCGGCGGAACCGACGCGATGCGGCCCTTCCCGGACGACCGC GGCTGGGACCTGGACCGCCTCTTCGACGAGGACCCCGACCGGCCGGGCACCTGCTACGCA CGCGAAGGCGGCTTCCTGCCCGGCGCGGGCGACTTCGACGCGGGCTTCTTCGGCCTGTCC GACCACGAGGCGACGGCCACCGACCCGCAGCAGCGCCTGCTCCTGGTGGCGGCCTGGGAG ACCTTCGAGCGGGCGGGCATCGACCCGGCGTCCCTGAAGGGCACCCGTACGGGCGTGTTC ACCGGCGCGATGGAGCGCGGCTACGGCGCTCTCGCGTCCGCCGTCCCCAGCGAGTGGGAG AGCACGCTCACCACCGGGGCCGCCAACAGCGCGATCTCCGGGCGCATCGCCTACACCTAC GGCCTCGAAGGCCCCGCGCTGACCGTCGACACCGCCTCCTCGTCCTCCCTCGTCGCCCTG CACCTGGCCTGCCGCTCCCTGCGGTCGGGCGAGACCGACCTGGCGCTGGCCGGCGGCGTC ACCGTCATGGCGACCCCGGCGCCCTTCACCCACTTCGCCCGGCTGCGCGCGCTCGCCACC GACTCGCGCGCCAAGGCGTACGCGGACACCGCGAACGGCTCCGCGTGGGCGGAAGGCGCG GGACTGCTGCTGCTGGAGCGGCTGAGCGACGCCCGCCGCAACGGACACCGTGTACTGGCG CTCGTACGGGGCTCGGCGGTCAACCAGGACGGCGCCTCCAACGGGCTCACCGCCCCGAGC GGCCCCGCGCAGCAGCGCGTCATCCGCCAGGCCCTGGCCGACGCCGGTCTGACGCCGCGG GACGTGGACGCGGTGGAGGGGCACGGCACCGGCACTCCGCTCGGCGACCCGATCGAGGCC CAGGCCCTGATGGCCACCTACGGCCAGGAGCGGCCGGAGGGACGGCCGCTGTGGCTGGGG TCGGTGAAGTCCAACCTCGGGCACACACAGGCCGCTGCCGGGGTCGTCGGGGTCATCAAG ACGGTGCTCGCGCTGGGCCGCGGCGTCCTGCCCAGGACGCTGCACGTGGAGACTCCTTCC ACCAAGGTCGACTGGTCCGCCGGGGCGGTACGGCTGCTGACCGAGGCGCAGCCCTGGCCC CAGGAGAGCGGGCACACGCGGCGGGCAGGAGTGTCGTCCTTCGGGCTCACCGGCACCAAC GCCCACGTGATCCTGGAGGAGGCCCCGGACGGGACGCAGAGCGCGCCCGGATCGGAACCG GCCGACGACACCGCCGTACCGTGGGTGCTCTCCGCACGGAGCCGGACGGCGCTGCGCGAA CAGGCCCGCCGCCTGGCCGAGCACGTGACCGCTCACCCCGGCCTGCGCACACAGGACATC GCCCACGCCCTGGCCACCACCCGCACCCGGCACCGGCACCGGGCCGTCGTCAGCGGCTCC GACCGGGACCGGATGCTGTCCGCGACGGCCGCGTTCGGGCGCGGGGAGCGGGCCGCGGAC GTCACCCCGCTCGATTCCGCGCCGGGCGGCCTGGCCTTCGTCTTCTCCGGACAGGGCGGC CAGCACCCCGGCATGGGGCGCGGGGCGGCCGAGGCGTTCCCCGTGTTCGGGGAGGCGCTG CGCGAGGTGTGCGACACCCTCGACCCGCTGCTGGCACGTCCGCTGACCTCGGTGATGTGG GCGGACGCCGACTCCGAGGAGGCGACGCTGCTGCACAACGCCGAGTTCTCGCAGCCCTCG CTGTTCGCCCTCCAGGTCGCCCTCTACCGGCTGTACGAGTCCTGGGGCATGGCCCCGGAC CGTCTCGCGGGCCATTCGGCCGGCGAGATCGCCGCCGCGCATGTCACCGGCATCCTCACC CTCCAGGACGCCTGCGCCCTGGTGGCCTCCCGGGGCAGGCTGATCAGCTCGCTGCCGGTC GGCGGCGCGACGGTGGCGGTGCGCATCTCGGAGGACGAGGTGCGGGGGTGGCTCGCCGAG GAGACGACCGGCTCGGTCTCGATCGCGGCCGTCAACGGGCCGCACTCCCTCGTACTCTCC GGTGCCGAGGCCCCGCTCATCGCCCTCACGGACCGGCTCCGCGACGCCGGCCACAAGACC CACCGCATCCCCATGAGGGTCGCGGCCCACTCACCGCTGATGGACCCCATCCTGGGGGAG TTCCGCGCGGTCGTCCGCACGCTGGCCTACGGCACGCCCACCATCCCCCTCGTCTCCACC GTCACCGGCCGCCCGCTGACCGACGAGGAGGCGCGCGACCCTGAGCACTGGGTACGGCAC GTGCGGCGGCCCGTGCGCTTCAAGGACGCGATCGGCCGGCTCCGGGAGGAGCGCGTCACC GGCTTCCTGGAGCTGGGCGCCGAGCCGCTGCTCACCCCCATGATCGACGAGTGCCTGGAG GCGGCCGGCCCGCAGCACGGAACCGCCGTGGTGCCGAGCCTGAGCTCCGGCGTACCGGAC CGGCAGATCCTGCTCTCCGCGGCCGCCCGGGTGCACACCCACGGCGCACCCGTCGACTGG GACGCGGTGCTGCCCGGGGCCCGGCCCGTCGACCTGCCGACGTACGCGTTCCAGCGGCGG CGGTTCTGGCTGGCGGCGGGGCCGGGTGCGGCCGCCGAGGCCGGTTTCGTGGGTGCCGCG ATCGGCGCGGGCGCGCCGGCGGCCGATGCGGAGGAGCCGTCGGGCCTGGAAGCCCGGCTG GCCGGTCTCGAAGACGCCGAACAGGACGCGTACGTACGCTCCCTGGTGCTCGCCGAGACC TCGGCCGTGCTCGGCGGCCAGGAACCGCTCGACAGCGAAGGCACCCACACCTTCAAGGAG ATGGGCATCAACTCGGTGAACGCCGTCGAGCTCCGCAACCGCCTCATCGCGGCCACGGAC CTGCGGCTCCCCGCCACGCTCGTCTACGACCACCCCACCCCGAACGCGGTCGTCCGCCTC GTACGCGAACGCCTCGCGCGCCCGGCCACCGCCGCACGCGACGTGGACTCGGTCGTGGCC GAGCTGGAGTCCCTGCTCACGGCCGGCGCGGAGGTCTCGGCGGAGGCGGTGGCACGGCTG AAGGCGATGGCGGCGGGGCGGGACGGCACTACGGACACCGGTTCCGGCGGGCCCCTGGAC CTGACGTCGGCCAGCGACGAGGACCTGTTCCGGCTGATGGACGCGGAGCACTGA
Feature
| BLASTP Database:UniProtKB:2011_09 |
|
|---|---|
| InterPro Database:interpro:38.0 |
IPR000873 AMP-dependent synthetase/ligase (Domain)
IPR001227 Acyl transferase domain (Domain)
IPR006162 Phosphopantetheine attachment site (PTM)
IPR009081 Acyl carrier protein-like (Domain)
IPR014030 Beta-ketoacyl synthase, N-terminal (Domain)
IPR014031 Beta-ketoacyl synthase, C-terminal (Domain)
IPR014043 Acyl transferase (Domain)
IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase (Domain)
IPR016036 Malonyl-CoA ACP transacylase, ACP-binding (Domain)
IPR016038 Thiolase-like, subgroup (Domain)
IPR016039 Thiolase-like (Domain)
IPR020801 Polyketide synthase, acyl transferase domain (Domain)
IPR020806 Polyketide synthase, phosphopantetheine-binding domain (Domain)
IPR020841 Polyketide synthase, beta-ketoacyl synthase domain (Domain)
|
| SignalP |  ![[1-17] 0.044 Signal](../../img/R.gif "[1-17] 0.044 Signal"){kind=small} |
| TMHMM | No significant hit |
![[51-457] 3.70000000000004e-77 PF00501](../../img/H.gif "[51-457] 3.70000000000004e-77 PF00501"){kind=small}
![[1189-1318] 1.10000000000001e-70 G3DSA:3.40.366.10](../../img/X2.gif "[1189-1318] 1.10000000000001e-70 G3DSA:3.40.366.10"){kind=small}
![[592-607] PS00012](../../img/P.gif "[592-607] PS00012"){kind=small}
![[557-634] PS50075](../../img/M.gif "[557-634] PS50075"){kind=small}
![[550-677] 1.60000240695997e-21 SSF47336](../../img/B.gif "[550-677] 1.60000240695997e-21 SSF47336"){kind=small}
