Rever_00050 Rever_00050   Rever_00070 Rever_00070

Rever_00060 : CDS information

close this sectionLocation

Organism
StrainSN-593
Entry nameReveromycin
Contig
Start / Stop / Direction6,399 / 5,725 / - [in whole cluster]
6,399 / 5,725 / - [in contig]
Locationcomplement(5725..6399) [in whole cluster]
complement(5725..6399) [in contig]
TypeCDS
Length675 bp (224 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category4.1 transcriptional regulator
Productputative GntR family transcriptional regulator
Product (GenBank)putative transcriptional regulator
Gene
Gene (GenBank)revP
EC number
Keyword
Note
Note (GenBank)
Reference
ACC
PmId
[21642985] Reveromycin A biosynthesis uses RevG and RevJ for stereospecific spiroacetal formation. (Nat Chem Biol. , 2011)
comment
配列解析によりrevPのfunctionをTranscriptional regulatorとしている。また、revO、revP、revQでRegulator and transporterとしている。実験情報は無し。
Related Reference
ACC
Q84II9
PmId
[16455652] ( , )
comment
Blast 385th, id29%, 1e-14
Janthinobacterium sp. J3_carR
Regulatory protein

カルバゾール分解に関与するcarオペロンのRegulatorとしてGntR family tanscriptional regulatorのCarRを推測（PMID: 15277751）。CarRがcarオペロンの上流域に結合。リプレッサーとして直接的にcarオペロンの転写を制御することを証明。（PMID: 16455652）

close this sectionSequence

selected fasta
>putative GntR family transcriptional regulator [putative transcriptional regulator]
MAQDRKSGRAGRSAVQQGVRQALAAGDMVPGQRLVEQELSDGFGVTRSSVREALQELAAE
GLVELVPNRGARVRVVSIEDAVLITECRSALEVLCARRAAVHATDDDRQALGGIGEGMRA
AVAEGALDTYSALNRRLHERVAAASGQTVAESLLDRLNAQMVRHQFRLAARAGRPAQSLP
QHLAIIDAIVAGDPDAAEKATRAHLDSVLEQVRATAGGAPSLVP
selected fasta
>putative GntR family transcriptional regulator [putative transcriptional regulator]
GTGGCGCAGGACCGGAAGTCGGGGCGGGCGGGGCGGAGCGCGGTGCAGCAGGGCGTCCGC
CAGGCGCTCGCGGCCGGGGACATGGTTCCCGGCCAGCGGCTGGTGGAGCAGGAGTTGTCG
GACGGCTTCGGCGTCACCCGCAGTTCGGTCCGCGAGGCCCTCCAGGAACTGGCCGCCGAG
GGGCTGGTGGAACTGGTCCCGAACCGGGGCGCGCGGGTCCGCGTGGTCTCGATCGAGGAC
GCCGTGCTGATCACGGAGTGCCGCTCCGCCCTCGAAGTCCTGTGTGCGCGGCGGGCGGCC
GTCCACGCGACGGACGACGACCGGCAGGCGCTCGGCGGGATCGGGGAGGGCATGCGCGCG
GCCGTCGCGGAAGGCGCCCTGGACACCTACTCCGCCCTCAATCGCCGCCTGCACGAGCGG
GTGGCCGCCGCGAGCGGCCAGACGGTGGCCGAGTCGCTGCTCGACCGGCTCAACGCCCAG
ATGGTGCGCCACCAGTTCCGGTTGGCCGCCCGCGCGGGCCGGCCCGCCCAGTCGCTCCCC
CAGCACCTGGCGATCATCGACGCGATCGTGGCCGGGGACCCGGACGCCGCCGAGAAGGCG
ACGCGGGCACACCTCGACAGCGTCCTGGAACAGGTGCGCGCCACCGCCGGCGGCGCCCCC
TCCCTCGTCCCCTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro
Database:interpro:38.0
IPR000524 Transcription regulator HTH, GntR (Domain)
[33-47] 8.70000305989074e-07 PR00035 [47-63] 8.70000305989074e-07 PR00035
PR00035   HTHGNTR
[14-73] 1.2e-16 PF00392
PF00392   GntR
[15-73] 1.69999922284049e-15 SM00345
SM00345   HTH_GNTR
[9-76] PS50949
PS50949   HTH_GNTR
IPR011711 GntR, C-terminal (Domain)
[83-207] 6.09999977126211e-22 SM00895
SM00895   FCD
[84-206] 2.5e-26 PF07729
PF07729   FCD
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding (Domain)
[3-74] 7.5e-20 G3DSA:1.10.10.10
G3DSA:1.10.10.10   Wing_hlx_DNA_bd
SignalP
[1-24] 0.208 Signal
Bacteria, Gram-negative   
TMHMM No significant hit
Rever_00050 Rever_00050   Rever_00070 Rever_00070
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