C1027_00240
C1027_00250 : CDS information
Location
| Organism | Streptomyces globisporus |
|---|---|
| Strain | C-1027 |
| Entry name | C-1027 |
| Contig | AY048670 |
| Start / Stop / Direction | 29,627 / 31,192 / + [in whole cluster] 29,627 / 31,192 / + [in contig] |
| Location | 29627..31192 [in whole cluster] 29627..31192 [in contig] |
| Type | CDS |
| Length | 1,566 bp (521 aa) |
Annotation
| Category | 4.3 transport |
|---|---|
| Product | putative drug resistance transporter |
| Product (GenBank) | transmembrane efflux protein |
| Gene | sgcB |
| Gene (GenBank) | |
| EC number | |
| Keyword | |
| Note | |
| Note (GenBank) |
|
| Reference |
|
| Related Reference |
|
|
Sequence
>putative drug resistance transporter [transmembrane efflux protein] MTAVKEPTSRAGRREWIALVVLSLPTMLLMLDINVLMLALPQLSEDLGASSTQQLWITDI YGFAIAGFLVTMGTLGDRIGRRRLLLGGAAVFAVVSVVAAFSDSAAMLVVSRAVLGVAGA TVMPSTLALISNMFEDPKERGTAIAMWASAMMAGVALGPAVGGLVLAAFWWGSVFLIAVP VMLLVVVTGPVLLTESRDPDAGRLDLLSAGLSLATVLPVIYGLKELARTGWDPLAAGAVV LGVIFGALFVQRQRRLADPMLDLGLFADRTLRAGLTVSLVNAVIMGGTGLMVALYLQTIA GHSPLAAGLWLLIPACMLVVGVQLSNLLAQRMPPSRVLLGGLLIAAVGQLLITQVDTEDT ALLIAATTLIYFGASPVGPITTGAIMGAAPPEKAGAASSLSATGGEFGVALGIAGLGSLG TVVYSAGVEVPDAAGPADADAAQESIAGALHTAGQLAPGSADALLDSARAAFTSGVQSVA AVCAVFSLALAVLIGTRLRDISAMDHGHGEEPAENDAQPAT
>putative drug resistance transporter [transmembrane efflux protein] GTGACAGCAGTCAAGGAGCCGACGTCCCGCGCAGGACGGCGGGAGTGGATCGCTCTCGTC GTCCTCTCCTTGCCCACGATGCTGTTGATGCTGGACATCAACGTCCTCATGCTGGCCTTG CCGCAGTTGAGCGAGGATCTCGGCGCGAGCAGCACGCAACAGCTGTGGATCACCGACATC TACGGATTCGCGATCGCCGGCTTCCTGGTGACCATGGGCACCCTCGGCGACCGGATCGGC CGCCGCAGGCTCCTGCTCGGGGGCGCGGCCGTCTTCGCGGTCGTGTCCGTCGTCGCCGCG TTCTCCGACAGCGCGGCGATGCTCGTCGTCAGCCGCGCCGTGCTCGGCGTCGCCGGGGCC ACGGTGATGCCCTCGACGCTCGCGCTCATCAGCAACATGTTCGAGGACCCCAAGGAGCGG GGCACCGCCATCGCCATGTGGGCGAGCGCCATGATGGCCGGAGTCGCCCTCGGGCCCGCC GTCGGCGGCCTGGTCCTCGCCGCGTTCTGGTGGGGATCGGTGTTCCTCATCGCCGTTCCG GTGATGCTGCTGGTGGTGGTCACCGGCCCCGTGCTGCTCACCGAGTCCCGCGACCCGGAC GCCGGACGGCTGGACCTGCTGAGCGCGGGGCTCTCCCTCGCGACCGTGCTGCCGGTGATC TACGGACTGAAGGAGCTGGCCCGGACCGGGTGGGACCCGCTCGCCGCCGGCGCGGTGGTC CTCGGCGTGATCTTCGGCGCGCTGTTCGTCCAGCGCCAGCGGCGGTTGGCCGACCCCATG CTGGACCTCGGCCTCTTCGCCGACCGCACCCTGCGGGCGGGTCTGACGGTCAGTCTGGTC AACGCCGTCATCATGGGCGGGACCGGACTGATGGTCGCCCTGTACCTCCAGACGATCGCC GGTCACTCCCCGTTGGCCGCCGGGCTGTGGCTGCTGATCCCGGCCTGCATGCTCGTCGTG GGCGTACAGCTGTCGAACCTGCTGGCCCAGCGGATGCCCCCTTCCCGGGTGCTGCTGGGG GGACTGCTGATCGCGGCCGTCGGACAGCTCCTGATCACCCAGGTGGACACCGAGGACACC GCCCTCCTCATCGCGGCCACCACCCTGATCTACTTCGGCGCCTCACCGGTGGGGCCGATC ACCACGGGCGCGATCATGGGAGCCGCGCCCCCGGAGAAGGCGGGTGCCGCCTCGTCGCTG TCCGCCACCGGCGGCGAGTTCGGAGTGGCGCTCGGCATCGCGGGCCTGGGGAGTCTGGGC ACCGTCGTGTACAGCGCCGGGGTCGAGGTGCCGGACGCGGCCGGGCCCGCCGACGCCGAC GCCGCGCAGGAGAGCATCGCCGGCGCCCTGCACACGGCCGGTCAGCTGGCACCGGGCAGC GCCGACGCCCTGCTGGACTCCGCGCGCGCGGCCTTCACCAGCGGCGTGCAGTCCGTCGCC GCCGTCTGCGCCGTGTTCTCCCTGGCGCTCGCCGTCCTCATCGGCACCCGGCTGCGGGAC ATTTCCGCGATGGACCACGGGCACGGCGAGGAACCGGCCGAGAACGACGCTCAACCGGCC ACATGA
Feature
| BLASTP Database:UniProtKB:2011_09 |
|
|---|---|
| InterPro Database:interpro:38.0 |
IPR011701 Major facilitator superfamily (Family)
IPR016196 Major facilitator superfamily domain, general substrate transporter (Domain)
IPR020846 Major facilitator superfamily domain (Domain)
|
| SignalP | No significant hit |
| TMHMM |  ![[17-39] Transmembrane (i-o)](../../img/C.gif "[17-39] Transmembrane (i-o)"){kind=small} ![[54-76] Transmembrane (o-i)](../../img/G.gif "[54-76] Transmembrane (o-i)"){kind=small} |
![[26-412] 2.4e-45 PF07690](../../img/H.gif "[26-412] 2.4e-45 PF07690"){kind=small}
![[1-516] 1.90000694315261e-72 SSF103473](../../img/B.gif "[1-516] 1.90000694315261e-72 SSF103473"){kind=small}
![[18-499] PS50850](../../img/M.gif "[18-499] PS50850"){kind=small}
