Calm_00080 Calm_00080   Calm_00100 Calm_00100

Calm_00090 : CDS information

close this sectionLocation

Organism
StrainNRRL 15839
Entry nameCalicheamicin
Contig
Start / Stop / Direction8,447 / 9,382 / + [in whole cluster]
8,447 / 9,382 / + [in contig]
Location8447..9382 [in whole cluster]
8447..9382 [in contig]
TypeCDS
Length936 bp (311 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)CalU6
Gene
Gene (GenBank)calU6
EC number
Keyword
Note
Note (GenBank)
Reference
ACC
PmId
[12183629] The calicheamicin gene cluster and its iterative type I enediyne PKS. (Science. , 2002)
comment
calicheamicin生合成遺伝子クラスターの報告

このORFは、Fig2の生合成clusterにて、unknown function(U1 to U22)として示されているのみ。
本文中では特にふれていない。

close this sectionSequence

selected fasta
>hypothetical protein [CalU6]
MTVTEQGAAAVAPRATPTGRGRIVLGATVAGVLLSVLWSYEFVDHVIGDSVANAMLGRDA
KATAIGGTLAGLVFAFVSGLAGTFTACNIAMAASIGPMSQAGAGGATRSALRSLARPVAW
LTAGMVAVAAVYGFVGVLVGDGLPQLSTASVGGLPVRLVQSMVVFGLIGLAFVYLGLAAL
GVLRDPFAHRPTARVVVLGALVGGFLIGRPYPLFNKLFHWAVETGNPLYGAGAFVLQSIG
NVAVVTALFALIVVLTRGRFVSWLAASPSRTAALTGGMLIALGVFMVVYWDVRLPAMFDY
GWFPTMPYNDR
selected fasta
>hypothetical protein [CalU6]
ATGACTGTCACTGAGCAAGGAGCCGCCGCCGTCGCTCCCCGGGCGACACCGACCGGGCGG
GGACGAATCGTGCTGGGTGCCACGGTCGCCGGCGTGCTGCTGTCGGTGCTGTGGTCCTAC
GAGTTCGTCGACCACGTCATCGGCGACTCGGTGGCCAACGCGATGCTCGGCCGCGACGCC
AAGGCGACCGCGATCGGGGGCACCCTGGCCGGTCTCGTCTTCGCCTTCGTCTCCGGTCTT
GCCGGCACGTTCACCGCCTGCAACATCGCCATGGCGGCGTCCATCGGCCCGATGAGCCAG
GCCGGTGCGGGCGGGGCGACGAGGAGCGCGCTGCGCAGCCTGGCACGGCCGGTGGCCTGG
CTCACGGCCGGCATGGTGGCCGTCGCCGCGGTCTACGGCTTCGTCGGCGTACTGGTCGGC
GACGGGTTGCCGCAACTGTCCACGGCGTCGGTCGGCGGTCTCCCGGTGCGCCTGGTCCAG
TCCATGGTCGTGTTCGGGCTGATCGGGCTGGCCTTCGTCTACCTGGGCCTGGCCGCGCTC
GGGGTGCTGCGGGACCCGTTCGCGCACCGACCGACGGCCCGCGTCGTGGTGCTCGGCGCC
CTTGTCGGCGGCTTCCTGATCGGCCGGCCGTACCCCCTGTTCAACAAGCTCTTCCACTGG
GCCGTGGAGACCGGCAACCCGCTCTACGGCGCCGGCGCGTTCGTCCTGCAGTCCATCGGC
AACGTCGCCGTCGTGACGGCGCTGTTCGCCCTGATCGTGGTGCTCACCCGCGGCCGATTC
GTGAGCTGGCTGGCCGCGAGCCCGTCCCGGACCGCCGCGCTGACCGGCGGGATGCTGATC
GCGCTGGGCGTGTTCATGGTCGTCTACTGGGACGTCCGGCTACCGGCGATGTTCGACTAC
GGATGGTTCCCGACCATGCCGTACAACGACAGGTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro No significant hit
SignalP No significant hit
TMHMM
[21-43] Transmembrane (i-o) [63-85] Transmembrane (o-i) [118-140] Transmembrane (i-o) [160-182] Transmembrane (o-i) [195-213] Transmembrane (i-o) [233-255] Transmembrane (o-i) [268-290] Transmembrane (i-o)
Transmembrane 7   
Calm_00080 Calm_00080   Calm_00100 Calm_00100
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