Dynm_00005 Dynm_00005   Dynm_00020 Dynm_00020

Dynm_00010 : CDS information

close this sectionLocation

Organism
StrainATCC 53710 (=NBRC 15963)
Entry nameDynemicin
Contig
Start / Stop / Direction2,116 / 3,345 / + [in whole cluster]
2,116 / 3,345 / + [in contig]
Location2116..3345 [in whole cluster]
2116..3345 [in contig]
TypeCDS
Length1,230 bp (409 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)hypothetical protein
Gene
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
  • ORF2
Reference
ACC
PmId
[18328078] The biosynthetic genes encoding for the production of the dynemicin enediyne core in Micromonospora chersina ATCC53710. (FEMS Microbiol Lett. , 2008)
comment
Dynemicin生合成遺伝子クラスターの報告。

orf2 Unknown protein

機能解析はされていない。

close this sectionSequence

selected fasta
>hypothetical protein [hypothetical protein]
MGSRTASEPTPSATADAGGGKIVMGAAGAAVTVATMLTNALAYLVPVLGAHRLDPADLGA
LATVLALGAIAAVPGFGLQIAVAVHRARSGPTRTGRLALLTAAVSAAVTVVAAPVLTVLL
RLPVALTLLLAATTFATVLAGRWLGELQGDQRFLRLSAAMTVLAVGRYGGLVVGLALGGD
AVTALALTAVTGLLVLPLLVRLAAGGRPAPTAGPGQRDLRPGDVMTACAATLATLTISYA
DLILARQLLPAAGSGAYAVGAVLTKGALWGPQVVTLLVLPRLARGDRRARALGLAVILAC
GSVLVAAAAFGGELAFRLAGGADYLHLAGEAPLFVATGALYAVVFMLVNDRVASGVRFPA
APLWAATVGLAGAALLVAPRTVEGVLGCALTTAALTAAVMTWLALRPRR
selected fasta
>hypothetical protein [hypothetical protein]
GTGGGATCCCGGACGGCGTCGGAACCGACGCCGTCCGCGACGGCCGACGCGGGCGGCGGG
AAGATCGTGATGGGCGCGGCCGGCGCCGCCGTCACGGTCGCCACCATGCTGACCAACGCG
CTCGCCTACCTGGTGCCGGTGCTCGGCGCCCACCGGCTCGACCCGGCCGACCTGGGGGCG
CTGGCGACCGTCCTCGCGCTCGGCGCGATCGCCGCCGTGCCGGGATTCGGCCTCCAGATC
GCCGTCGCGGTGCACCGGGCGCGGAGCGGCCCCACCCGCACCGGCCGGCTGGCGCTGCTC
ACCGCCGCCGTCAGCGCCGCGGTCACGGTGGTCGCGGCGCCGGTGCTGACCGTGCTGCTG
CGGCTGCCGGTGGCGCTCACCCTGCTGCTCGCGGCGACCACCTTCGCCACCGTGCTGGCC
GGCCGGTGGCTCGGCGAGCTCCAGGGTGACCAGCGCTTCCTCCGGCTCTCCGCGGCGATG
ACGGTCCTCGCCGTCGGCCGGTACGGCGGCCTTGTCGTCGGGCTGGCGCTGGGCGGGGAC
GCCGTCACCGCGCTGGCGCTCACCGCGGTCACCGGCCTCCTCGTGCTGCCGCTGCTGGTC
CGCCTCGCCGCCGGCGGCCGACCGGCGCCCACCGCCGGGCCCGGGCAGCGCGACCTGCGC
CCCGGGGACGTGATGACCGCGTGCGCGGCCACGCTGGCGACGCTCACCATCTCGTACGCC
GATTTGATCCTGGCCCGCCAACTGCTGCCGGCGGCCGGCTCCGGGGCGTACGCGGTCGGC
GCGGTGCTGACAAAGGGCGCGCTCTGGGGGCCGCAGGTGGTGACCCTGCTGGTGCTGCCC
CGGCTGGCCCGGGGCGACCGGCGGGCCCGGGCGCTGGGCCTGGCGGTCATCCTCGCCTGC
GGGTCGGTGCTGGTGGCCGCCGCGGCGTTCGGCGGGGAGCTGGCGTTCCGGCTGGCCGGC
GGCGCCGACTACCTGCACCTGGCCGGCGAGGCTCCGCTCTTCGTCGCCACCGGCGCCCTG
TACGCGGTCGTCTTCATGCTGGTCAACGACCGGGTGGCCAGCGGTGTCCGGTTCCCCGCG
GCACCCCTGTGGGCGGCCACCGTGGGGCTGGCCGGGGCGGCCCTGCTGGTCGCCCCGCGT
ACGGTCGAGGGGGTCCTCGGCTGTGCGCTGACCACCGCCGCGCTGACCGCCGCCGTGATG
ACCTGGCTGGCCCTGCGCCCGCGGCGCTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro No significant hit
SignalP No significant hit
TMHMM
[23-45] Transmembrane (i-o) [60-82] Transmembrane (o-i) [95-117] Transmembrane (i-o) [122-144] Transmembrane (o-i) [156-178] Transmembrane (i-o) [182-204] Transmembrane (o-i) [224-246] Transmembrane (i-o) [256-278] Transmembrane (o-i) [290-312] Transmembrane (i-o) [327-349] Transmembrane (o-i) [356-378] Transmembrane (i-o) [383-405] Transmembrane (o-i)
Transmembrane 12   
Dynm_00005 Dynm_00005   Dynm_00020 Dynm_00020
Page top