Gelda2_00310 Gelda2_00310   Gelda2_00330 Gelda2_00330

Gelda2_00320 : CDS information

close this sectionLocation

Organism
StrainNRRL 3602 (=NBRC 14620)
Entry nameGeldanamycin
Contig
Start / Stop / Direction9,155 / 8,358 / - [in whole cluster]
9,155 / 8,358 / - [in contig]
Locationcomplement(8358..9155) [in whole cluster]
complement(8358..9155) [in contig]
TypeCDS
Length798 bp (265 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)putative integral membrane protein
Gene
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
  • ORF9; similar to Streptomyces coelicolor SCO0865 and SCO0867
Reference
ACC
comment
gdm PKS clusterから30kb以上離れたところにあるAHBA関連clusterに隣接するORF。
UniProtで登録されている[PMID:16085885]で同定されたという6ORFsにこのORFは含まれない。
Related Reference
ACC
Q848B2
NITE
Gelda_00150
comment
Blast id83%, 1e-102
Streptomyces hygroscopicus 17997_gndM
Putative integral-membrane protein

geldanamycin生合成に関連するAHBA生合成clusterに隣接するORF。
関連する論文なし。

close this sectionSequence

selected fasta
>hypothetical protein [putative integral membrane protein]
MSTFGGGPHATLVTGVMKIEPSSRAPATAGTMAAMSAGPPFRLARAAVFAAVCVVVTALG
HTLMSSDALPVWAVAAAFAATTAAAWWVAGRERGALVVTGATVVAQLGLHMAFRFAEMTV
APAAGSAMGHRMPGMRDMGTAPMSGGAMGHMHHGADAMSSAAPSMGHLPWPWAGPGGAGM
AAAHLLAALVCGLWLWRGERAAFRLGRALAALLFVPLVLALRILGAGATPLPAWPSAPAF
ARRPRGVLLRHAILRRGPPRRFAVR
selected fasta
>hypothetical protein [putative integral membrane protein]
ATGAGCACATTCGGGGGCGGCCCACACGCCACGCTTGTCACCGGCGTGATGAAGATTGAG
CCGTCGTCACGCGCACCGGCGACGGCTGGCACCATGGCTGCCATGTCCGCCGGGCCACCC
TTCCGTCTCGCACGAGCCGCCGTGTTCGCGGCGGTGTGCGTCGTGGTGACCGCGCTCGGG
CACACGCTGATGTCCAGCGACGCCCTGCCGGTGTGGGCCGTGGCCGCCGCGTTCGCCGCG
ACGACGGCCGCCGCGTGGTGGGTCGCCGGGCGCGAGCGCGGAGCGCTGGTCGTGACCGGT
GCGACGGTGGTCGCGCAACTCGGCCTGCACATGGCGTTCCGATTCGCGGAGATGACCGTC
GCTCCCGCCGCGGGAAGCGCCATGGGCCACCGGATGCCCGGTATGCGGGACATGGGCACC
GCCCCGATGAGCGGCGGCGCCATGGGCCACATGCACCATGGCGCGGACGCGATGTCCTCC
GCCGCGCCGTCGATGGGCCATCTGCCGTGGCCCTGGGCGGGCCCCGGCGGGGCGGGCATG
GCCGCGGCCCACCTGCTCGCCGCGCTGGTCTGCGGACTGTGGCTGTGGCGCGGCGAACGC
GCGGCCTTCCGCCTCGGCCGCGCGCTCGCGGCCCTGCTGTTCGTCCCGCTCGTCCTCGCC
CTGCGCATCCTCGGCGCGGGCGCCACTCCGCTGCCCGCATGGCCGTCCGCACCGGCCTTC
GCCCGCCGGCCGCGCGGAGTTCTGCTACGGCACGCCATTCTCCGCAGAGGGCCACCGAGG
CGGTTCGCCGTCCGCTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro No significant hit
SignalP No significant hit
TMHMM
[41-63] Transmembrane (i-o) [68-90] Transmembrane (o-i) [95-113] Transmembrane (i-o) [174-196] Transmembrane (o-i) [209-231] Transmembrane (i-o)
Transmembrane 5   
Gelda2_00310 Gelda2_00310   Gelda2_00330 Gelda2_00330
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