Gelda2_00310 : CDS information
Location
Organism | Streptomyces geldanamycininus |
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Strain | NRRL 3602 (=NBRC 14620) |
Entry name | Geldanamycin |
Contig | AY952143 |
Start / Stop / Direction | 8,174 / 7,542 / - [in whole cluster] 8,174 / 7,542 / - [in contig] |
Location | complement(7542..8174) [in whole cluster] complement(7542..8174) [in contig] |
Type | CDS |
Length | 633 bp (210 aa) |
Annotation
Category | 5.1 general function |
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Product | putative RNA polymerase ECF-type sigma factor |
Product (GenBank) | putative sigma factor |
Gene | |
Gene (GenBank) | |
EC number | |
Keyword | |
Note | |
Note (GenBank) |
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Reference |
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Related Reference |
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Sequence
>putative RNA polymerase ECF-type sigma factor [putative sigma factor] MPSATLPAAPMRAMHGFTTAANDRQVTAWALAARDGDRDAVDHFIRATYRDVRRFVLHLS ADPHGCEDLAQETYLRALTGLSRFAGRSSARTWLLSIARRVVVDRYRMTAARPRTLESDD WQEVAERAQPVGLPGFDEGVALMDLLAGLAPARREMFLLTTVLGLPYADAATATGCPIGT VRSRVARAREEITALLAAAEKAAEPVRLAG
>putative RNA polymerase ECF-type sigma factor [putative sigma factor] ATGCCTTCCGCCACGCTGCCCGCCGCACCGATGAGAGCCATGCACGGCTTCACCACCGCG GCGAACGACCGCCAGGTCACCGCATGGGCGCTGGCCGCCCGTGACGGCGACCGCGACGCG GTCGACCACTTCATCCGCGCCACCTACCGCGATGTGCGCCGCTTCGTACTCCATCTCAGC GCCGACCCCCACGGCTGTGAGGACCTCGCCCAGGAGACGTATCTGCGGGCGCTGACCGGA CTCTCGCGCTTCGCCGGCCGCTCATCGGCCCGCACCTGGCTGCTGTCGATCGCCCGCCGG GTGGTCGTCGACCGCTACCGCATGACCGCCGCCCGCCCCCGCACCCTGGAGTCGGACGAC TGGCAGGAGGTGGCCGAACGGGCGCAGCCCGTCGGGCTCCCCGGGTTCGACGAGGGGGTG GCGCTGATGGACCTGCTGGCTGGGCTCGCCCCGGCGCGCCGCGAGATGTTCCTCCTCACC ACGGTACTCGGCCTGCCGTACGCGGACGCCGCCACCGCGACCGGCTGCCCCATCGGCACC GTGCGCTCCCGTGTGGCCCGCGCCCGTGAGGAGATCACCGCACTGCTGGCCGCGGCCGAG AAGGCCGCAGAACCCGTGCGGCTGGCGGGCTGA
Feature
BLASTP Database:UniProtKB:2011_09 |
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InterPro Database:interpro:38.0 |
IPR007627 RNA polymerase sigma-70 region 2 (Domain)
IPR013249 RNA polymerase sigma factor 70, region 4 type 2 (Domain)
IPR013324 RNA polymerase sigma factor, region 3/4 (Domain)
IPR013325 RNA polymerase sigma factor, region 2 (Domain)
IPR014284 RNA polymerase sigma-70 (Domain)
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SignalP | No significant hit |
TMHMM | No significant hit |