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Microbe : Planctomyces brasiliensis

Microbe Description

NBRC No. 103401
Scientific name Planctomyces brasiliensis
Synonymous name Not assigned
History IAM 15109 <- DSM 5305 <- IFAM 1448
Other culture collection No. ATCC 49424=DSM 5305=IAM 15109=IFAM 1448=JCM 21570
Other No.
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferasePlabr_0457
TRPE
(NRULE_0143)
Anthranilate synthase component IPlabr_3420
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductasePlabr_1007
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphatasePlabr_4683
Ectoine biosynthesis(NFUNC_0056)
RequireA
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminasePlabr_3301
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferasePlabr_3300
ECTC
(NRULE_0188)
L-ectoine synthasePlabr_3302
GABA biosynthesis(NFUNC_0066)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylasePlabr_1322
Hydroxyectoine biosynthesis(NFUNC_0057)
RequireA
ECTD
(NRULE_0189)
Ectoine hydroxylasePlabr_3303
Participant 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminasePlabr_3301
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferasePlabr_3300
 
ECTC
(NRULE_0188)
L-ectoine synthasePlabr_3302
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthasePlabr_4695
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Plabr_4695
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDPlabr_2819
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthasePlabr_0755
RIBE
(NRULE_0204)
Riboflavin synthasePlabr_2632
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFPlabr_2734

Genomic Overview

BioProject IDPRJNA47863
Locus_tagPLABR
INSDC entriesCP002546
Sequence statusComplete
Current statusFinished
Contig number1
Size(bp) 6,006,602
Gene 4,750
Finishing goalFinished
Assembly methodNewbler v. 2.3
Coverage
Technology
  • 454
  • Illumina
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.8 MB 1.5 MB 1.1 MB 361.6 KB