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Microbe : Desulfovibrio vulgaris subsp. vulgaris

Microbe Description

NBRC No. 104121
Scientific name Desulfovibrio vulgaris subsp. vulgaris
Synonymous name Desulfovibrio vulgaris
History DSM 644 <- G. Gottschalk <- NCIB 8303 <- M.E. Adams & K.R. Butlin, Hildenborough
Other culture collection No. ATCC 29579=CCUG 34227=CIP 107040=DSM 644=LMG 7563=NCAIM B.01489=NCIB 8303=NCIMB 8303=VKM B-1760
Other No. Hildenborough
Reference
5342518
Classification of Desulfovibrio species, the nonsporulating sulfate-reducing bacteria. (Bacteriol Rev. 1966)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseDVU_0955
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseDVU_2548
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseDVU_1660
Chloramphenicol resistance(NFUNC_0025)
RequireA
CAT1
(NRULE_0107)
Chloramphenicol acetyltransferaseDVU_2145
B
CAT4
(NRULE_0108)
Chloramphenicol acetyltransferaseDVU_1992
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinDVU_0179 DVU_0771
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinDVU_2667 DVU_0177
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikRDVU_2891
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinDVU_0177 DVU_2667
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinDVU_0181
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinDVU_0180
Nitrogenase(NFUNC_0094)
RequireA
NIFD
(NRULE_0347)
Nitrogenase molybdenum-iron protein alpha chainDVUA0012
NIFK
(NRULE_0348)
Nitrogenase molybdenum-iron protein beta chainDVUA0011
VNFH
(NRULE_0353)
Nitrogenase reductaseDVUA0015

Genomic Overview

BioProject IDPRJNA51
Locus_tagDVU
INSDC entriesAE017285
Sequence statusComplete
Current status
Contig number2
Size(bp) 3,773,159
Gene 3,531
Finishing goal
Assembly method
Coverage
Technology
Reference
  • The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. (Nat Biotechnol. 2004) PMID: 15077118

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.1 MB 986.4 KB 693.5 KB 273.6 KB