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Microbe : Rothia dentocariosa

Microbe Description

NBRC No. 12531
Scientific name Rothia dentocariosa
Synonymous name Not assigned
History IFO 12531 <- KCC A-0067 <- NCDC W-858 <- G.D. Roth, XD-1A
Other culture collection No. ATCC 17931=CCUG 35437=CIP 81.83=DSM 43762=DSM 46363=JCM 3067=NCDC W-858=NCTC 10917=NRRL B-8017
Other No. KCC A-0067=XD-1A
Reference
13465125
Proteolytic organisms of the carious lesion. (Oral Surg Oral Med Oral Pathol. 1957)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseHMPREF0733_10256
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseHMPREF0733_10945
TRPE
(NRULE_0143)
Anthranilate synthase component IHMPREF0733_11818
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseHMPREF0733_11108
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseHMPREF0733_11957
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinHMPREF0733_10188
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinHMPREF0733_10331
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinHMPREF0733_10331
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterHMPREF0733_11875
E
OPUE
(NRULE_0222)
Sodium/proline symporterHMPREF0733_10417
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSHMPREF0733_11099
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTHMPREF0733_11098

Genomic Overview

BioProject IDPRJNA48447
Locus_tagHMPREF0733
INSDC entriesCP002280
Sequence statusComplete
Current statusFinished
Contig number1
Size(bp) 2,506,025
Gene 2,217
Finishing goalFinished
Assembly methodNewbler Assembler v. 2.3.10192009
Coverage
Technology
  • 454
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
763.0 KB 665.6 KB 458.2 KB 186.5 KB