Microbe : Lactobacillus plantarum subsp. plantarum

Microbe Description

NBRC No.	15891
Scientific name	Lactobacillus plantarum subsp. plantarum
Synonymous name	Not assigned
History	IFO 15891 <- JCM 1149 <- ATCC 14917 <- P.A. Hansen, Lp 39 <- Roy. Techn. Coll., Copenhagen <- S. Orla-Jensen, No. 39
Other culture collection No.	ATCC 14917=DSM 20174=IAM 12477=JCM 1149=NRIC 1067
Other No.
Reference	Not assigned

Functional Potential >>Details


Type	Pattern	Component Gene		CDS
Alanine racemization(NFUNC_0063)
Require	A	ALR (NRULE_0228)	Alanine racemase	HMPREF0531_12314
Aromatic azo compounds degradation(NFUNC_0073)
Require	A	AZOR (NRULE_0236)	FMN-dependent NADH-azoreductase	HMPREF0531_11156 HMPREF0531_12298
Bacitracin resistance(NFUNC_0022)
Require	A	UPPP (NRULE_0097)	Undecaprenyl-diphosphatase	HMPREF0531_12672
Chloramphenicol resistance(NFUNC_0025)
Require	A	CAT1 (NRULE_0107)	Chloramphenicol acetyltransferase	HMPREF0531_10803
GABA biosynthesis(NFUNC_0066)
Require	A	GAD (NRULE_0231)	Glutamate decarboxylase	HMPREF0531_12685
Macrolide antibiotic resistance(NFUNC_0045)
Require	B	RLMA (NRULE_0165)	23S rRNA (guanine-N(1))-methyltransferase	HMPREF0531_12236
Malolactic fermentation(NFUNC_0070)
Require	A	MLE (NRULE_0233)	Malolactic enzyme	HMPREF0531_10007
Metal-binding protein(NFUNC_0105)
Require	A	MOP (NRULE_0322)	Putative molybdenum-binding protein	HMPREF0531_12431 HMPREF0531_10254
Require	C	MODA (NRULE_0324)	Molybdate ABC transporter substrate-binding protein	HMPREF0531_10768 HMPREF0531_13081
Molybdate transport (ABC transporter)(NFUNC_0097)
Require	A	MODA (NRULE_0324)	Molybdate ABC transporter substrate-binding protein	HMPREF0531_10768 HMPREF0531_13081
Phenol degradation(NFUNC_0028)
Require	B	PHEA1 (NRULE_0083)	Aromatic ring hydroxylase	HMPREF0531_12294
Tannin degradation(NFUNC_0082)
Require	A	TASE (NRULE_0255)	Tannase	HMPREF0531_12033
Uptake of osmoprotectant(NFUNC_0061)
Require	A	OPUAC (NRULE_0213)	Osmoprotectant ABC transporter substrate-binding protein	HMPREF0531_10642
		OPUAB (NRULE_0214)	Osmoprotectant ABC transporter permease protein	HMPREF0531_10641 HMPREF0531_10643
		OPUAA (NRULE_0215)	Osmoprotectant ABC transporter ATP-binding protein	HMPREF0531_10640

Genomic Overview

BioProject ID	PRJNA31515
Locus_tag
INSDC entries	ACGZ02000000
Sequence status	WGS
Current status	Improved High-Quality Draft
Contig number	36
Size(bp)	3,198,761
Gene	3,154
Finishing goal	Improved High-Quality Draft
Assembly method	Newbler Assembler v. 1.1.03.24_64
Coverage	36x
Technology	454

Reference

Data Download

Genomic nucleotide sequence	Nucleotide sequence of the coding regions	Translation of the coding sequneces	List of genes / ORFs
FASTA gz	FASTA gz	FASTA gz	TSV uncompressed

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