Rule : Alginate lyase (ALY)

Rule Description

ID	NRULE_0227
Rule name	ALY
Created	2013-05-28
Protein name	Protein name Full Alginate lyase
Gene name	aly
Rule Trigger	PFAM; PF08787; hit=1 OR BLASTP; I6P4V6; hit=1; score=2000; pid=85 OR BLASTP; A9CEJ9; hit=1; score=1800; pid=45
Cross Reference
Feature	Not assigned
General annotation	Not assigned
Reference	Q53EJ1 Vibrio sp. QY101. 15621659 Cloning, sequence analysis and expression of gene alyVI encoding alginate lyase from marine bacterium Vibrio sp. QY101. (DNA Seq. 2004) I6P4V6 Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas maltophilia). 22805784 Molecular cloning, purification, and characterization of a novel polyMG-specific alginate lyase responsible for alginate MG block degradation in Stenotrophomas maltophilia KJ-2. (Appl Microbiol Biotechnol. 2012) A9CEJ9 Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58)). 16545947 A biosystem for alginate metabolism in Agrobacterium tumefaciens strain C58: molecular identification of Atu3025 as an exotype family PL-15 alginate lyase. (Res Microbiol. 2006)

Related Function

Function name
Alginate degradation

CDS

Scientific name	NBRC No.	CDS	Product name
Alteromonas macleodii	102226	MASE_04170	cyclic nucleotide-binding domain-containing protein
		MASE_04185	putative alginate lyase
Amycolatopsis mediterranei	13415	RAM_20915	hypothetical protein
Catenulispora acidiphila	102108	Caci_1606	Alginate lyase 2
		Caci_7491	Alginate lyase 2
Cellulophaga lytica	14961	Celly_0299	Alginate lyase 2
		Celly_3050	Poly(beta-D-mannuronate) lyase
Chryseobacterium gleum	15054	HMPREF0204_13464	alginate lyase
Chthoniobacter flavus		CfE428DRAFT_1594	Alginate lyase 2
Cystobacter fuscus	100088	D187_001810	F5/8 type C domain protein
Gluconobacter frateurii	101659	GfraN1_010100004704	hypothetical protein
Kordia algicida	100336	KAOT1_04160	Poly(beta-D-mannuronate) lyase
		KAOT1_04170	putative alginate lyase
		KAOT1_04175	alginate lyase
		KAOT1_04210	hypothetical protein
Kribbella flavida	14399	Kfla_1504	Alginate lyase 2
Niastella koreensis	106392	Niako_4104	Alginate lyase 2
		Niako_5220	Alginate lyase 2
Pseudomonas putida	100650	PP_3774	conserved hypothetical protein
Stackebrandtia nassauensis	102104	Snas_3336	Alginate lyase 2
Streptomyces avermitilis	14893	SAV0802	hypothetical protein
Vibrio alginolyticus	15630	N646_4461	hypothetical protein
		N646_4462	alginate lyase precursor
		N646_4465	hypothetical protein