Pimar_00050 : CDS information
Location
Organism | Streptomyces natalensis |
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Strain | ATCC 27448 (=NBRC 13367) |
Entry name | Pimaricin |
Contig | AJ278573 |
Start / Stop / Direction | 16,480 / 10,406 / - [in whole cluster] 9,736 / 3,662 / - [in contig] |
Location | complement(10406..16480) [in whole cluster] complement(3662..9736) [in contig] |
Type | CDS |
Length | 6,075 bp (2,024 aa) |
Annotation
Category | 1.1 PKS |
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Product | polyketide synthase |
Product (GenBank) | PimS4 protein |
Gene | |
Gene (GenBank) | pimS4 |
EC number | |
Keyword | |
Note | |
Note (GenBank) | |
Reference |
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PKS/NRPS Module
12 | malonyl-CoA |
Sequence
>polyketide synthase [PimS4 protein] MPNDKPNDKKLVDYLKWVTNDLHQTRQRLREVESAKQEPIAIVGMSCRLPGGVRSPEEFW QLLKDGRDGISTFPTDRGWDLDLLAGDGSGSSATAEGGFIDAASFDAGFFGISPREAVTM DPQQRILLESSWEALERAGIDPVSLRGTETGVFVGTSGIDYINTVMNSREDIEGHGSTGL IASILSGRVSYTFGLEGPAVTVDTACSSSLVSLHLAAQALRVGECSLALAGGVTAISTPM SFVGFSRQGGLAPDGRCKAFSDTADGTAWSEGVGVLVVERLSDARRNGHPVLAVVRGSAV NQDGASNGLTAPSGPSQQRVIRQALAAAGLSASDVDVVEAHGTGTALGDPIEAQALLATY GRDRDPERPLLLGSVKSNLGHTQAAAGAAGLIKMILAMRHGVLPRTLHVEAPSSHVDWSS GALQLLTEPQEWPKADRPWRAGVSSFAISGTNAHIILEQPPAAEEPEDEEGPHTSPSAVP WLVSAKSEEALTAQLDRISALTDRSPLDLGLSLATTRAHLEHRAVLLSEGGETVEVARGH AEHTAGKLAVLFSGQGAQRVGMGRELYGRFPVFAEALDGVLAHFDAGLRDVMFGEAEGLD ETGFTQPALFAIEVALFRLSESLGVRPDFVAGHSIGEIAAAHVAGVFSLADACALVAARA RLMQALPAGGAMVAVQAAESEVAARLVDGVSIAAVNGPEAVVIAGEEREVLRIAEEFTGL GRKTRRLPVSHAFHSPLMEPMLEDFRRVAEGLSYEAPRIALVSNLTGELATEDLVRSAEY WVRHVRETVRFADGVSALAAEGASVFLELGPDGVLTAMAQHTLDGTATTVPALRKDRSEE TALLTALAQLHVAGVGVDWSGIFAGTGARRVDLPTYPFQHERYWPRPAVLSGDVVGAGLR SAEHPLLGATLTLAESGEVVLTGRLSLQAYPWLTDHTMGGSVLFPATGFLELAMRAADQV GCDRVDEFVLMTPLVLAEESGTQVQVLVGPADEAGTRTISIHARPDGDPDQPWMQHAGGT LTSGERIVDFGSTVWPPQGAEAVDLEGFYDTTGYGPAFQGLRSVWQCEDGAYVEVALPDQ VAEDAGAFGLHPVLLDAVLQSRRMAGIGAAGDTFLPFAWRGVSLHAGGASVLRARVIKTG EDTLSLVAVDAEGAPVLSVEELVLRTQLTHTDAPLTARRGAERDALLSLEWVSGPEVPPA GVRCVSLGADELGVGASVATLADLSGDEDFVVVPVSGVGGDVPAAAHELTARTLGLLQEW SGREGTSASRLVFVTRNAVSADGGESVRDVAAAAVWGLVRSAQSESPGRIALVDLEADSG DLAEVLAGLPGLLAAGDAQFVVREGAVRVGRLVESNEGAGVSPREWDADGTVLVTGGTGG LGRELARHLVVERGVRHLLLVSRSGPEASGVGELRDELAAHGAEIAVRACDVADRAAVEA VVGAVDAAHPLTAVIHTAGVLDDGVIASLTPERLSAVLRPKVDAAWNLHEATKDLDLAAF VLYSSISGVLGSLGQGNYAAGNVFLDALAGHRAGLGLPAQSLAWGAWTQGGGMTATLSDA DMQRMASYGTAPLSPERGLALFDAATAGSATHLVAVGRVSGPVRAQGPVPSMLRGLVKGA RRTAVNTTGETAVSLADRLRAARPEERTQLMTDVVRTEAAAVLGHASSQNVDARREFYEL GFDSLTSVELRNRLSTVTGLRLSATVVFDSKNPTDLAARLYADLAAQSALDGSASQAGFL PVAAPETDSLERMFLDALDSGKVPEAQRMLSALGALRPSFENTAELEDLPLPATLAEGPG TPRLICVSTPTANGGVHEYARLAASFRGERHVSALPLVGFATGERLPATAETAVRVIAES ALRASDGNPFVLVGHSSAGAFAYLAAALLENTWGIRPEAVVLLDTLSLRHEQNESIDYAG LMRRHFMVDEVSPVRMTNSRLSAMARWMGMLNQLEVRHTTVPVLIIRATKETFGIGTDTG IYGEDHGSPVDVRSVDADHFSMVRDDAPETARIVREWLDSLGNA
>polyketide synthase [PimS4 protein] ATGCCGAACGACAAGCCGAACGACAAAAAGCTCGTTGACTACCTCAAGTGGGTCACGAAC GACTTGCACCAGACCCGCCAACGGCTTCGGGAAGTCGAGTCCGCCAAGCAGGAACCGATA GCCATCGTGGGCATGTCCTGCCGACTACCGGGTGGCGTGCGGTCGCCGGAAGAATTCTGG CAGTTGTTGAAGGACGGCCGGGACGGCATCTCGACCTTCCCCACGGACCGCGGCTGGGAC CTCGACCTGCTCGCCGGCGACGGCAGTGGCAGCAGTGCCACCGCCGAAGGCGGCTTCATC GACGCCGCCTCGTTCGACGCGGGCTTCTTCGGCATCTCGCCCCGCGAGGCCGTGACGATG GACCCCCAGCAGCGCATCCTGCTGGAGTCCTCCTGGGAGGCCCTGGAGCGCGCCGGAATC GACCCCGTGTCCCTGCGGGGCACCGAGACCGGTGTCTTCGTGGGCACGAGCGGTATCGAC TACATCAACACCGTGATGAACTCCCGCGAGGACATCGAAGGCCACGGCAGCACCGGCCTC ATCGCCAGCATCCTGTCCGGCCGGGTCTCGTACACCTTCGGCCTGGAGGGCCCGGCCGTC ACCGTCGACACCGCATGCTCCTCCTCCCTGGTCTCACTGCACCTGGCGGCCCAGGCGCTG CGTGTGGGGGAGTGCTCGCTGGCGCTGGCCGGAGGGGTGACGGCGATATCGACGCCGATG AGCTTCGTCGGATTCAGCAGGCAGGGCGGGCTGGCGCCGGACGGCCGGTGCAAGGCGTTC TCCGACACGGCCGACGGCACCGCATGGTCCGAGGGCGTGGGCGTTCTGGTCGTGGAGCGC CTGTCCGACGCCCGCCGCAACGGGCATCCGGTCCTCGCGGTCGTACGGGGCTCGGCCGTC AACCAGGACGGCGCCTCCAACGGCCTGACGGCCCCCAGCGGTCCCTCCCAGCAGCGGGTG ATCCGGCAGGCGCTGGCCGCCGCCGGTCTGTCGGCCTCGGACGTGGACGTGGTCGAGGCC CATGGCACCGGCACCGCGCTCGGTGATCCGATCGAGGCGCAGGCGCTGCTGGCCACGTAC GGCCGGGACCGGGACCCCGAGCGGCCGCTGCTGCTGGGGTCGGTCAAGTCCAACCTCGGT CACACGCAGGCGGCGGCCGGCGCGGCCGGGCTGATCAAGATGATCCTGGCGATGCGGCAC GGCGTCCTGCCCAGGACGCTGCATGTGGAGGCGCCGTCGTCACATGTGGACTGGTCGTCC GGTGCGCTGCAACTGCTGACGGAGCCTCAGGAGTGGCCCAAGGCCGACCGGCCGTGGCGG GCCGGCGTGTCGTCCTTCGCCATCAGCGGCACCAACGCCCACATCATCCTTGAGCAGCCA CCGGCCGCCGAGGAGCCCGAGGACGAGGAAGGGCCGCATACCTCGCCGTCGGCCGTGCCC TGGCTGGTCTCCGCGAAGTCCGAGGAGGCACTGACCGCGCAGCTCGACCGGATCTCCGCG CTGACCGACCGGTCGCCTCTCGACCTGGGCCTCTCACTGGCGACCACCCGGGCGCATCTG GAGCACCGTGCGGTGCTGCTGTCCGAGGGCGGCGAAACCGTCGAGGTGGCACGCGGGCAC GCCGAGCACACGGCCGGGAAGCTGGCGGTGCTGTTCTCGGGGCAGGGTGCTCAACGCGTC GGGATGGGCCGGGAGTTGTACGGTCGGTTCCCGGTGTTCGCCGAGGCGTTGGACGGGGTG CTGGCGCACTTCGATGCCGGGTTGCGGGATGTGATGTTCGGCGAGGCGGAGGGCCTGGAC GAGACCGGGTTCACCCAGCCCGCGCTGTTCGCCATCGAGGTGGCGTTGTTCCGGCTGTCT GAGTCTCTGGGTGTGCGGCCGGATTTCGTGGCCGGGCACTCGATCGGTGAGATCGCGGCG GCGCATGTCGCCGGGGTGTTCTCGCTGGCGGATGCGTGTGCGTTGGTGGCGGCCCGTGCG CGGCTGATGCAGGCCCTCCCGGCGGGCGGCGCGATGGTCGCCGTTCAGGCGGCAGAGAGC GAGGTGGCTGCACGGCTGGTCGACGGGGTGTCGATCGCGGCGGTCAACGGCCCGGAGGCG GTGGTGATCGCAGGGGAGGAGCGCGAAGTCCTGCGGATCGCCGAGGAGTTCACCGGCCTG GGGCGTAAGACACGGCGCCTGCCGGTCAGCCACGCCTTCCACTCGCCGCTGATGGAGCCG ATGCTGGAGGACTTCCGACGGGTCGCCGAGGGACTGTCGTACGAAGCCCCGCGGATCGCG CTGGTGTCGAACCTCACCGGCGAACTCGCCACCGAGGACCTCGTCCGCTCGGCCGAGTAC TGGGTCCGGCATGTGCGCGAGACCGTGCGCTTCGCCGACGGTGTGAGTGCCCTGGCCGCC GAAGGGGCCTCCGTCTTCCTGGAGTTGGGCCCTGACGGTGTGCTGACGGCGATGGCCCAG CACACCCTGGACGGCACCGCGACCACCGTACCGGCCCTGCGTAAGGACCGGTCCGAGGAG ACCGCGCTGCTCACCGCCCTCGCCCAGCTGCATGTCGCGGGCGTCGGGGTGGACTGGTCC GGGATCTTCGCCGGCACCGGTGCCCGCCGCGTCGACCTGCCCACCTACCCCTTCCAGCAC GAGCGCTACTGGCCTCGTCCCGCCGTGCTCAGCGGCGATGTGGTCGGTGCGGGTCTGCGG TCCGCCGAGCACCCGCTGCTGGGCGCGACGCTCACCCTCGCGGAGTCCGGTGAGGTGGTG CTGACGGGCAGGCTGTCGCTTCAGGCATACCCGTGGCTGACCGACCACACCATGGGCGGC AGCGTCCTCTTCCCGGCCACCGGCTTTCTGGAGCTGGCGATGCGCGCCGCCGATCAGGTC GGCTGCGACCGGGTCGACGAGTTCGTCCTGATGACTCCGCTGGTGCTCGCGGAGGAGAGC GGCACCCAGGTCCAGGTGCTGGTCGGACCCGCCGACGAGGCAGGCACCCGCACGATCTCC ATCCATGCCCGCCCCGACGGCGACCCCGACCAGCCGTGGATGCAGCACGCGGGCGGCACG CTGACCAGCGGTGAACGGATCGTGGACTTCGGGTCCACGGTCTGGCCGCCGCAGGGCGCC GAGGCCGTCGACCTGGAGGGCTTCTACGACACGACGGGTTACGGCCCGGCCTTCCAGGGC CTGCGTTCGGTGTGGCAGTGCGAGGACGGTGCCTACGTGGAGGTGGCGCTGCCGGACCAG GTCGCCGAGGACGCCGGGGCCTTCGGGCTCCATCCGGTGCTGCTGGACGCGGTGCTCCAG TCGCGCCGGATGGCCGGGATCGGCGCTGCGGGGGACACGTTCCTGCCCTTCGCCTGGCGC GGTGTGTCGCTGCATGCGGGCGGCGCCTCGGTCCTGCGGGCCCGGGTGATCAAAACCGGC GAGGACACGCTGTCTCTTGTGGCCGTCGACGCCGAAGGCGCCCCCGTCCTGTCCGTCGAG GAACTCGTTCTGCGCACCCAACTCACCCATACAGACGCACCGTTGACGGCGCGACGTGGC GCGGAGCGCGACGCACTGTTGTCGTTGGAGTGGGTGTCGGGTCCTGAGGTGCCGCCTGCC GGGGTGCGGTGCGTGTCCCTGGGTGCGGATGAGCTGGGTGTGGGCGCATCGGTTGCCACT CTGGCGGACCTCTCCGGCGATGAGGATTTCGTGGTGGTTCCCGTGTCCGGTGTGGGTGGT GATGTGCCTGCTGCCGCGCACGAGTTGACGGCCCGGACGCTCGGTCTGCTTCAGGAGTGG TCCGGCCGGGAGGGGACGAGCGCTTCGCGTTTGGTGTTCGTCACCCGTAACGCGGTCTCC GCCGACGGAGGCGAGTCCGTACGCGATGTGGCCGCGGCTGCGGTGTGGGGTCTGGTGCGC TCGGCGCAGTCGGAGAGTCCGGGGCGGATCGCGCTGGTGGACCTGGAGGCCGACTCCGGA GACCTGGCGGAGGTGCTTGCGGGTCTGCCGGGTCTGTTGGCTGCCGGGGACGCTCAGTTC GTAGTGCGCGAAGGCGCTGTGCGGGTGGGGCGGTTGGTCGAGTCGAACGAGGGCGCGGGC GTGTCGCCGCGGGAGTGGGATGCGGACGGCACGGTGCTGGTCACCGGTGGTACCGGGGGT CTGGGGCGTGAGTTGGCCCGGCATCTGGTGGTCGAGCGCGGTGTACGGCATCTGCTGCTG GTCAGCCGGAGCGGACCCGAGGCATCCGGCGTAGGGGAGCTGCGCGACGAACTGGCCGCC CACGGCGCCGAGATAGCGGTCCGTGCCTGCGATGTAGCGGACCGGGCGGCGGTGGAGGCC GTCGTGGGTGCGGTGGATGCCGCGCATCCGCTGACCGCGGTGATCCACACGGCCGGTGTT CTCGATGACGGTGTGATCGCCTCGCTGACGCCGGAGCGGCTGTCGGCCGTACTGCGCCCG AAGGTGGATGCGGCCTGGAATCTGCACGAGGCCACCAAGGACCTCGACCTGGCCGCGTTC GTCCTGTACTCGTCCATCTCCGGAGTGCTCGGTTCTCTGGGACAGGGCAACTACGCGGCG GGCAACGTGTTCCTCGATGCGCTGGCCGGGCACCGGGCGGGCCTGGGGCTGCCCGCGCAG TCCCTGGCCTGGGGCGCCTGGACCCAGGGTGGCGGTATGACCGCCACCCTCTCCGATGCG GACATGCAGCGGATGGCCTCGTACGGGACCGCACCGCTGAGCCCCGAGCGCGGCCTGGCG CTCTTCGACGCCGCTACCGCCGGCAGCGCGACCCACCTCGTCGCGGTCGGCCGCGTCTCC GGACCGGTGCGGGCCCAGGGCCCCGTCCCGTCGATGCTGCGCGGCCTGGTCAAGGGCGCC CGCCGCACGGCCGTGAACACGACGGGAGAGACGGCCGTGTCCCTCGCCGACCGGCTGCGG GCCGCGCGCCCCGAGGAGCGCACGCAGCTGATGACCGATGTCGTACGGACCGAGGCCGCC GCCGTCCTCGGACACGCCTCATCCCAGAACGTCGACGCCCGCAGGGAGTTCTACGAGCTG GGCTTCGACTCCCTGACCTCCGTCGAACTGCGCAACCGGCTCTCCACCGTCACCGGACTA CGGCTGTCGGCAACCGTGGTCTTCGACAGCAAGAACCCCACCGACCTCGCGGCCCGGCTC TACGCCGACCTGGCCGCCCAGTCGGCCCTGGACGGCTCCGCGTCGCAAGCGGGCTTCCTC CCGGTCGCCGCACCGGAGACCGACTCGCTGGAGCGGATGTTCCTCGACGCCCTGGACAGC GGCAAGGTCCCGGAGGCCCAGCGCATGCTCTCCGCCCTCGGCGCCCTGCGTCCGAGCTTC GAGAACACCGCCGAACTGGAGGATCTGCCGCTCCCGGCAACCCTCGCCGAGGGCCCCGGC ACGCCGCGGCTGATCTGTGTGAGCACACCCACCGCCAACGGTGGCGTACACGAATACGCC AGGCTCGCCGCGTCCTTCCGAGGTGAGCGGCACGTCAGCGCGCTGCCGCTGGTCGGCTTT GCCACGGGGGAGCGTCTGCCGGCCACTGCGGAGACCGCGGTGCGGGTCATCGCGGAGAGC GCGCTGCGGGCGAGCGACGGCAACCCGTTCGTGCTGGTCGGGCACTCGTCCGCCGGCGCC TTCGCCTACCTGGCTGCGGCCCTGCTGGAGAACACCTGGGGCATCCGGCCCGAGGCCGTC GTGCTGCTGGACACCCTCAGCCTCCGGCACGAGCAGAACGAGAGCATCGACTACGCCGGC CTGATGCGACGCCACTTCATGGTCGACGAGGTCTCGCCGGTACGGATGACGAACTCCAGG CTGTCGGCGATGGCGCGCTGGATGGGCATGCTGAACCAGCTCGAAGTGCGGCACACGACC GTTCCCGTACTGATCATCCGTGCCACCAAGGAGACCTTCGGCATCGGGACCGACACCGGA ATCTACGGCGAGGACCACGGCAGCCCGGTCGACGTCCGCAGCGTGGACGCGGACCACTTC TCCATGGTCCGCGACGACGCCCCGGAGACCGCGCGGATCGTCCGGGAATGGCTCGACTCC CTCGGCAACGCGTGA
Feature
BLASTP Database:UniProtKB:2011_09 |
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InterPro Database:interpro:38.0 |
IPR001031 Thioesterase (Domain)
IPR001227 Acyl transferase domain (Domain)
IPR006162 Phosphopantetheine attachment site (PTM)
IPR009081 Acyl carrier protein-like (Domain)
IPR013968 Polyketide synthase, KR (Domain)
IPR014030 Beta-ketoacyl synthase, N-terminal (Domain)
IPR014031 Beta-ketoacyl synthase, C-terminal (Domain)
IPR014043 Acyl transferase (Domain)
IPR015083 Polyketide synthase, docking (Domain)
IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase (Domain)
IPR016036 Malonyl-CoA ACP transacylase, ACP-binding (Domain)
IPR016038 Thiolase-like, subgroup (Domain)
IPR016039 Thiolase-like (Domain)
IPR016040 NAD(P)-binding domain (Domain)
IPR018201 Beta-ketoacyl synthase, active site (Active_site)
IPR020801 Polyketide synthase, acyl transferase domain (Domain)
IPR020802 Polyketide synthase, thioesterase domain (Domain)
IPR020806 Polyketide synthase, phosphopantetheine-binding domain (Domain)
IPR020807 Polyketide synthase, dehydratase domain (Domain)
IPR020841 Polyketide synthase, beta-ketoacyl synthase domain (Domain)
IPR020842 Polyketide synthase/Fatty acid synthase, KR (Domain)
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SignalP | No significant hit |
TMHMM | No significant hit |