Pimar_00060 : CDS information
Location
Organism | Streptomyces natalensis |
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Strain | ATCC 27448 (=NBRC 13367) |
Entry name | Pimaricin |
Contig | AJ278573 |
Start / Stop / Direction | 21,942 / 16,516 / - [in whole cluster] 15,198 / 9,772 / - [in contig] |
Location | complement(16516..21942) [in whole cluster] complement(9772..15198) [in contig] |
Type | CDS |
Length | 5,427 bp (1,808 aa) |
Annotation
Category | 1.1 PKS |
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Product | polyketide synthase |
Product (GenBank) | PimS3 protein |
Gene | |
Gene (GenBank) | pimS3 |
EC number | |
Keyword | |
Note | |
Note (GenBank) | |
Reference |
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PKS/NRPS Module
11 | malonyl-CoA |
Sequence
>polyketide synthase [PimS3 protein] MTTSSETVVAALRASLKEAENLRRQNRKLVAAATEPIAIVAMACRYPGGVQSPEDLWELL TAGKDAIGAFPTDRGWDLDALRDAGVDRRGNAVSQEGGFLDGVGDFDADFFGISPRESVT MDPQQRLLLETSWEAIERAGIDPTTLRGSRTGVFIGTNGQDYAYLLVRSLADATGDIGTG IAASATSGRLSYTLGLEGPAVTVDTACSSSLVALHTASHALRAGECSLALVGGVNVMSSP GSLMEFSRQGGLAADGRCKAFSDTADGTGWSEGVGVLVVERLSDARRNGHPVLAVVRGSA VNQDGASNGFTAPSGPSQQRVIRQALAAAGLSASDVDVVEAHGTGTPLGDPIEAQALLAT YGQDRDPERPLLLGSVKSNLGHTQAAAGAAGLIKMILAMRHGVLPKTLYADVPSSHVDWT SGEVELLTEPQEWPKADRPWRAGVSSFGISGTNAHVIVEQAEPDEEPVAEPGLAPAVVPW LVSAKTEEALAAQLARISSRRGTASPVDVGFSLASGRSAFEHRAVLLAQCPDGELSEAAR GRAETSRPLAVLFSGQGAQRVGMGRELYVRFPVFAEALDEVLAHFDAGLRDVMFGDAEGL DETGFTQPALFAIEVALFRLAESLGVRPDFVGGHSIGEIAAAHVAGVFSLTDACALVAAR ARLMQALPAGGAMVAVQASESEVAARLVDGVSIAAVNGPEAVVLAGDETAVLRIAEELAA GGRKTQRLPVSHAFHSPLMEPMLEDFRRVAEGLSYGAPQIPLVSNVTGELAVEELVCSPD YWVRHVRETVRFADGVSALEAEGASAFLELGPDGVLTAMARHTLDETKVAVPVLRKDRPE ETALLTALAHLHVAGIGVDWSGIFAGTGARRVDLPTYPFQHERYWPRPAVLSGDVAGAGL RSAEHPLLGATLTLAESGEVVLTGRLSLQTHPWLTDHAIGGNVFFPGTGFLELAMHAADQ AGCDRVEDLVLMTPLVLAEENGTQVQVLVGPADEAGTRTISIHARPEDDPDQPWMQHAGG TLTSGERVVDFGSTVWPPQDAVAVDLEGFYEGTGYGPAFQGLRSVWSCGDGAYAEVALPD HVAEDAGAFGLHPALLDAVLQSHRIAGVGSADDQFLPFAWRGVSLHAGGASVLRVRVVKT GDDSMSIAAVDAEGAPVLSAEAMVMRAYRDPGTGQAAARHGAERDELLSLEWVSGPEVPP AGVRCVSLGADELGVGASVASLADLSGDEDFVVLPVSGVGGDVPAAAHELTARTLGLLQE WSGREGSSGSRLVFVTRNAVSADEGESVRDVAAAAVWGLVRSAQSESPGRIALVDLEADS GDLAEVLAGLPGLLAAGDAQFVVREGAVRVGRLVESNEGAGVSPREWDADGTVLVTGGTG GLGRELARHLVVERGVRHLLLVSRSGPEAPGVSGLSDELAAHGAEVTVRACDVADRAAVH ALVAAVPAEHPLTAVIHTAGVLDDGLVTSLTPERLSTVLRPKVDAAWNLHEATKDLDLAA FVLYSSISGVLGAPGQANYAAGNVFLDALAWHRMGQGLPAQSLAWGAWTQDGGMTATLSD TDMQRMASYGTAPLSRQRGLALFDAACARSAAHLVAVGRVGGPVRASAPVPSVLRGLVKG ARRTAVNTTGETAVSLADRLRAARPEERPRLMTDLVRTEAAAVLGHASAKNVDARREFNE LGFDSLTSVELRNRLSALTGLRLSAALVFDYPNPTALADHFVSELVEEAATGPALLAELE RLDSALAAGAPDARTRAAVTARLAQILDDWRDAPAEEDGAEVAERLEAASTDEIFAFIDN ELGRHSDR
>polyketide synthase [PimS3 protein] ATGACCACATCCAGTGAAACCGTCGTCGCAGCCCTCCGCGCCTCGCTGAAGGAAGCCGAG AACCTGCGCCGCCAGAACCGCAAGCTCGTCGCCGCGGCCACGGAGCCGATCGCGATCGTG GCGATGGCCTGCCGCTACCCCGGCGGTGTCCAGTCGCCCGAGGACCTGTGGGAGCTGCTG ACCGCGGGCAAGGACGCCATCGGCGCGTTCCCCACGGACCGCGGCTGGGACCTGGACGCC CTGCGGGACGCCGGGGTCGACCGGCGCGGCAACGCCGTCAGCCAGGAAGGGGGCTTCCTC GACGGCGTGGGCGACTTCGACGCGGACTTCTTCGGGATCTCACCTCGCGAATCCGTCACC ATGGACCCGCAGCAGCGCCTCCTGCTGGAGACCTCCTGGGAGGCCATCGAACGCGCCGGC ATCGACCCGACCACCCTGCGCGGCAGCCGCACCGGCGTGTTCATCGGCACCAACGGCCAG GACTACGCCTACCTGCTCGTACGCTCCCTGGCCGACGCCACCGGCGACATCGGCACCGGA ATCGCCGCCAGCGCCACCTCCGGGAGGCTGTCGTACACGCTGGGCCTGGAGGGCCCGGCG GTCACCGTCGACACGGCGTGCTCGTCCTCGCTCGTGGCCCTGCACACGGCGAGCCACGCC CTGCGGGCCGGTGAGTGCTCGCTGGCCCTGGTCGGCGGGGTGAACGTCATGTCGTCCCCC GGTTCCCTGATGGAGTTCAGCAGGCAGGGCGGGCTCGCGGCGGACGGCCGGTGCAAGGCG TTCTCCGACACGGCCGACGGCACCGGGTGGTCGGAGGGCGTGGGCGTTCTGGTCGTGGAG CGCCTGTCCGACGCCCGCCGCAACGGGCATCCCGTCCTCGCGGTCGTACGGGGCTCGGCC GTCAACCAGGACGGCGCCTCCAACGGCTTCACCGCGCCCAGCGGTCCCTCCCAGCAGCGG GTGATCCGGCAGGCGCTGGCCGCCGCCGGTCTGTCGGCCTCGGACGTGGACGTGGTCGAG GCCCACGGCACCGGCACCCCGCTCGGTGATCCGATCGAGGCGCAGGCGCTGCTGGCCACG TACGGTCAGGACCGCGACCCCGAGCGGCCGCTGCTGCTGGGGTCGGTCAAGTCCAACCTC GGCCATACCCAGGCGGCGGCCGGCGCGGCAGGGCTGATCAAGATGATCCTGGCGATGCGG CACGGTGTCCTGCCCAAGACGCTGTACGCCGATGTGCCGTCCTCCCACGTGGACTGGACG TCGGGGGAGGTGGAGCTGCTGACGGAGCCTCAGGAGTGGCCCAAGGCCGACCGCCCGTGG CGGGCCGGCGTGTCCTCGTTCGGCATCAGCGGCACCAACGCCCATGTGATCGTGGAGCAG GCGGAACCGGACGAAGAGCCGGTGGCGGAACCGGGGTTGGCGCCCGCGGTGGTGCCATGG CTGGTGTCCGCCAAGACCGAGGAGGCGCTGGCGGCACAGCTCGCGCGGATCTCCTCGCGC AGGGGCACGGCGTCACCGGTGGACGTGGGATTCTCGCTCGCCTCGGGCCGTTCGGCGTTC GAGCACCGCGCGGTGCTGCTGGCCCAGTGCCCCGACGGCGAGCTGTCCGAGGCGGCCCGG GGCCGCGCGGAGACGAGCCGCCCGCTGGCGGTGCTGTTCTCGGGGCAGGGTGCTCAACGG GTGGGTATGGGCCGGGAGTTGTATGTCCGGTTCCCGGTGTTCGCCGAGGCGTTGGACGAG GTGCTGGCGCACTTCGATGCCGGGTTGCGGGACGTGATGTTCGGTGATGCGGAGGGGTTG GACGAGACCGGGTTCACGCAGCCCGCGCTGTTTGCCATTGAGGTGGCGTTGTTCCGGCTG GCCGAGTCTCTGGGTGTGCGGCCGGATTTCGTGGGCGGGCACTCGATCGGTGAGATCGCG GCGGCGCATGTCGCCGGGGTGTTCTCGCTGACGGATGCGTGTGCGTTGGTGGCGGCTCGG GCGCGGCTGATGCAGGCCCTCCCGGCGGGCGGTGCCATGGTCGCCGTACAGGCGTCGGAG AGCGAGGTGGCCGCACGGCTGGTCGACGGGGTGTCGATCGCGGCGGTCAACGGCCCGGAG GCGGTGGTGCTCGCCGGGGACGAGACCGCGGTGCTCCGTATCGCGGAGGAGCTGGCGGCA GGGGGACGCAAGACGCAGCGCCTGCCGGTCAGCCACGCCTTCCACTCGCCGCTGATGGAG CCGATGCTGGAGGACTTCCGGCGGGTGGCCGAGGGGCTGTCGTACGGGGCTCCGCAGATC CCGCTCGTCTCGAACGTGACCGGGGAGCTCGCGGTCGAGGAGCTGGTGTGCTCGCCGGAC TATTGGGTGCGGCATGTACGGGAGACGGTGCGTTTCGCCGACGGTGTGAGCGCCCTGGAG GCCGAAGGGGCCAGCGCCTTCCTGGAGTTGGGCCCGGACGGGGTACTGACCGCGATGGCC CGGCACACTCTGGACGAGACGAAGGTGGCTGTCCCCGTATTGCGCAAGGACCGGCCCGAG GAGACCGCGCTGCTCACCGCCCTCGCCCACCTGCATGTCGCGGGCATCGGGGTGGACTGG TCCGGGATCTTCGCCGGCACCGGTGCCCGCCGCGTCGACCTGCCCACCTACCCCTTCCAG CACGAGCGCTACTGGCCTCGTCCTGCCGTGCTCAGCGGAGATGTGGCCGGTGCGGGTCTG CGGTCCGCGGAGCACCCGCTGCTGGGTGCGACGCTCACCCTCGCGGAGTCCGGTGAGGTG GTGCTGACGGGCAGGCTGTCGCTGCAAACGCATCCGTGGCTGACCGACCACGCCATCGGC GGCAACGTCTTCTTCCCGGGAACCGGCTTTCTGGAGCTGGCGATGCACGCCGCCGACCAG GCCGGCTGCGACCGCGTAGAGGACCTCGTCCTGATGACTCCGCTGGTGCTCGCGGAGGAG AACGGCACCCAGGTCCAGGTGCTGGTCGGACCCGCCGACGAGGCAGGCACCCGCACGATC TCCATCCATGCCCGCCCGGAAGACGACCCCGACCAGCCGTGGATGCAGCACGCGGGCGGC ACGCTGACCAGCGGCGAGCGCGTCGTGGACTTCGGTTCCACCGTGTGGCCGCCGCAGGAC GCGGTGGCCGTCGACCTGGAGGGCTTCTACGAAGGGACCGGTTACGGCCCCGCGTTCCAG GGCCTGCGTTCGGTGTGGAGCTGCGGGGACGGTGCCTACGCGGAAGTGGCCCTGCCGGAC CACGTGGCCGAGGACGCCGGGGCCTTCGGGCTCCATCCGGCGCTGCTGGACGCGGTGTTG CAGTCGCACCGCATCGCCGGGGTCGGCAGCGCGGACGACCAGTTCCTGCCCTTCGCCTGG CGAGGCGTCTCGCTGCATGCGGGCGGCGCCTCGGTCCTGCGGGTCCGGGTCGTGAAGACC GGCGACGACTCGATGTCCATCGCGGCCGTCGACGCCGAAGGCGCACCCGTACTGTCCGCC GAGGCGATGGTGATGCGGGCCTACCGCGACCCCGGCACCGGCCAGGCGGCGGCACGGCAC GGCGCGGAGCGCGATGAGCTGTTGTCGTTGGAGTGGGTGTCGGGTCCTGAGGTGCCGCCG GCCGGGGTGCGGTGCGTGTCCCTGGGCGCGGATGAACTGGGTGTGGGCGCGTCGGTCGCC TCGTTGGCGGACCTCTCCGGGGACGAGGATTTCGTGGTGCTTCCCGTGTCCGGTGTGGGT GGTGATGTGCCTGCTGCCGCGCACGAGTTGACGGCCCGGACGCTCGGTCTGCTTCAGGAG TGGTCCGGCCGCGAGGGCTCAAGTGGCTCGCGTTTGGTGTTCGTCACCCGTAACGCGGTC TCCGCCGACGAAGGCGAGTCCGTACGCGATGTGGCCGCGGCTGCGGTGTGGGGTCTGGTG CGCTCGGCGCAGTCGGAGAGTCCGGGGCGGATCGCGCTGGTGGACCTGGAGGCCGACTCC GGCGATCTCGCGGAGGTGCTTGCGGGTCTGCCGGGTCTGTTGGCTGCCGGGGACGCTCAG TTCGTAGTGCGCGAAGGTGCTGTGCGGGTGGGGCGGTTGGTCGAGTCGAACGAGGGCGCG GGCGTGTCGCCGCGGGAGTGGGATGCGGACGGCACGGTGCTGGTCACCGGTGGTACCGGG GGTCTGGGGCGTGAGTTGGCCCGGCATCTGGTGGTCGAGCGCGGTGTACGGCATCTGCTG CTGGTCAGCCGGAGCGGACCCGAGGCGCCGGGCGTCTCCGGACTGAGCGACGAACTGGCC GCCCACGGCGCGGAGGTCACCGTGCGCGCCTGCGACGTGGCCGACCGGGCGGCGGTGCAC GCTCTCGTCGCTGCCGTACCGGCCGAACACCCGTTGACCGCCGTGATCCACACGGCCGGT GTCCTCGATGACGGGCTGGTCACCTCGCTGACACCGGAGCGGCTGTCGACCGTACTGCGC CCGAAGGTGGATGCGGCCTGGAATCTGCACGAGGCCACCAAGGACCTCGACCTGGCCGCG TTCGTGCTGTACTCGTCCATCTCCGGGGTGCTCGGTGCTCCCGGACAGGCCAACTACGCG GCAGGCAACGTGTTCCTCGATGCGCTCGCCTGGCACCGGATGGGGCAGGGGCTGCCCGCG CAGTCCCTGGCCTGGGGCGCCTGGACCCAGGACGGCGGCATGACCGCCACCCTCTCCGAC ACGGATATGCAGCGGATGGCCTCCTACGGCACCGCACCGCTGAGCCGGCAGCGCGGCCTG GCCCTGTTCGACGCCGCCTGTGCGCGCAGCGCGGCCCACCTCGTCGCGGTCGGCCGGGTC GGCGGGCCGGTGCGGGCCTCGGCCCCGGTCCCGTCGGTGCTGCGCGGCCTGGTCAAGGGC GCCCGCCGCACGGCCGTGAACACGACGGGAGAGACGGCCGTGTCCCTCGCCGACCGGCTG CGGGCCGCGCGCCCCGAGGAGCGCCCGCGCCTGATGACGGACCTGGTCCGCACCGAGGCC GCCGCCGTCCTCGGACACGCCTCGGCGAAGAACGTCGACGCCCGGCGGGAGTTCAACGAA CTCGGCTTCGACTCCCTGACCTCCGTCGAACTGCGCAACCGGCTCTCCGCCCTCACCGGA CTGCGGCTGAGCGCCGCCCTCGTCTTCGACTACCCCAACCCCACCGCGCTCGCCGACCAC TTCGTCTCGGAGCTCGTGGAAGAGGCCGCCACGGGACCGGCCCTCCTGGCAGAACTCGAA CGGCTCGACTCCGCACTCGCCGCCGGCGCGCCCGACGCCCGAACCAGGGCCGCCGTCACC GCCCGTCTGGCGCAGATCCTTGACGACTGGCGGGACGCCCCAGCGGAGGAGGACGGCGCA GAGGTCGCCGAGCGGCTCGAAGCCGCCAGCACCGACGAGATCTTCGCCTTCATCGACAAC GAGCTCGGCCGTCACAGCGATCGCTGA
Feature
BLASTP Database:UniProtKB:2011_09 |
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InterPro Database:interpro:38.0 |
IPR001227 Acyl transferase domain (Domain)
IPR002198 Short-chain dehydrogenase/reductase SDR (Family)
IPR006162 Phosphopantetheine attachment site (PTM)
IPR009081 Acyl carrier protein-like (Domain)
IPR014030 Beta-ketoacyl synthase, N-terminal (Domain)
IPR014031 Beta-ketoacyl synthase, C-terminal (Domain)
IPR014043 Acyl transferase (Domain)
IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase (Domain)
IPR016036 Malonyl-CoA ACP transacylase, ACP-binding (Domain)
IPR016038 Thiolase-like, subgroup (Domain)
IPR016039 Thiolase-like (Domain)
IPR016040 NAD(P)-binding domain (Domain)
IPR018201 Beta-ketoacyl synthase, active site (Active_site)
IPR020801 Polyketide synthase, acyl transferase domain (Domain)
IPR020806 Polyketide synthase, phosphopantetheine-binding domain (Domain)
IPR020807 Polyketide synthase, dehydratase domain (Domain)
IPR020841 Polyketide synthase, beta-ketoacyl synthase domain (Domain)
IPR020842 Polyketide synthase/Fatty acid synthase, KR (Domain)
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SignalP | No significant hit |
TMHMM | No significant hit |