Rifam_00020 Rifam_00020   Rifam_00040 Rifam_00040

Rifam_00030 : CDS information

close this sectionLocation

Organism
StrainS699
Entry nameRifamycin
Contig
Start / Stop / Direction1,559 / 2,731 / + [in whole cluster]
1,559 / 2,731 / + [in contig]
Location1559..2731 [in whole cluster]
1559..2731 [in contig]
TypeCDS
Length1,173 bp (390 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category4.3 transport
Productputative ABC transporter ATP-binding protein
Product (GenBank)putative ABC transporter ATP-binding protein
Gene
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
  • ORF21
Reference
ACC
comment
[PMID: 9512878, 9497318, 11278540]
UniProtに登録されているこれらの論文には、図表を含め、このORFについての記述がない。
その他にも記載論文なし。
Related Reference
ACC
Q9Z402
PmId
[9658016] Isolation and characterization of toluene-sensitive mutants from the toluene-resistant bacterium Pseudomonas putida GM73. (J Bacteriol. , 1998)
comment
327th, id38%, 3e-43, C末不足
Pseudomonas putida_ttg2A
Toluene tolerance protein Ttg2A

ttg2Aはトルエン耐性遺伝子の一つであり、ABC transporterのサブユニット。フェノールで誘導される。
Family/Domain
FD
IPR003439, IPR003593
comment
[IPR003439] ABC transporter-like (Domain)
function; ATP binding, ATPase activity

[IPR003593] ATPase, AAA+ type, core (Domain)
function; nucleotide binding, nucleoside-triphosphatase activity

close this sectionSequence

selected fasta
>putative ABC transporter ATP-binding protein [putative ABC transporter ATP-binding protein]
MGAEVVIEGLTKSFGKQAIWRDVTLTLPPGEVSAMLGPSGTGKSVFLKSMIGLLKPDRGR
CMINGVDIVTCSEHKLYEIRKLFGVLFQDGALFGSMNLYDNVAFPLREHTKKSETEIRRI
VLEKLDMTGLNGADKKLPGEISGGMRKRAGLARALVLDPEIILVDEPDSGLDPVRTTYIS
QLFLDVNAQIDATFLIVTHNINLARTVPDNLGMLFRKELVMFGPREVLLTSEEPVVKQFL
NGKMQGPIGMSEEKDSAQMAAEQAMFEAGHHAGGVEDVSGVPPQMQPTPGVPTRMGAVRR
KDRVMEIMHRLPPAAQESIIESLSPEEQRHYGVRPHRGQPQQVGARPQGDGVPNQHHGQL
PADQVARIPGGQPPRTGTHRMPPNNGPGGR
selected fasta
>putative ABC transporter ATP-binding protein [putative ABC transporter ATP-binding protein]
ATGGGTGCCGAGGTGGTCATCGAAGGTCTGACGAAGTCCTTCGGTAAGCAGGCCATCTGG
CGGGACGTCACGTTGACGCTCCCCCCGGGCGAAGTGTCGGCCATGCTCGGCCCGTCGGGG
ACCGGCAAGTCGGTCTTCCTGAAGTCGATGATCGGGCTGCTCAAGCCCGACCGCGGCCGC
TGCATGATCAACGGGGTGGACATCGTCACCTGCTCCGAGCACAAGCTGTACGAGATCCGG
AAGCTCTTCGGTGTCCTCTTCCAGGACGGCGCGCTGTTCGGCTCGATGAACCTCTACGAC
AACGTCGCCTTCCCGCTGCGTGAGCACACGAAGAAGTCCGAGACGGAAATCCGCCGGATC
GTGCTCGAGAAGCTCGACATGACCGGTCTGAACGGCGCCGACAAGAAGCTGCCGGGCGAG
ATCTCCGGCGGGATGCGCAAGCGCGCCGGCCTGGCCCGCGCCCTGGTGCTCGACCCGGAG
ATCATCCTGGTCGACGAGCCGGACTCGGGCCTCGACCCGGTCCGCACCACCTACATCTCG
CAGCTGTTCCTCGACGTCAACGCGCAGATCGACGCGACGTTCCTGATCGTCACCCACAAC
ATCAACCTGGCCCGCACGGTGCCGGACAACCTGGGCATGCTCTTCCGCAAGGAACTGGTC
ATGTTCGGCCCGCGCGAGGTGCTGCTGACCAGCGAAGAGCCGGTCGTCAAGCAGTTCCTC
AACGGCAAGATGCAGGGCCCGATCGGCATGTCCGAGGAGAAGGACAGCGCCCAGATGGCC
GCCGAGCAGGCGATGTTCGAAGCCGGCCACCACGCGGGCGGGGTCGAGGACGTCTCCGGC
GTGCCGCCGCAGATGCAGCCGACGCCGGGCGTGCCCACCCGGATGGGTGCCGTCCGCCGC
AAGGACCGGGTCATGGAGATCATGCACCGGCTGCCGCCGGCCGCGCAGGAAAGCATCATC
GAGTCGCTGAGCCCCGAGGAGCAGCGCCACTACGGTGTGCGGCCGCACCGCGGGCAGCCG
CAGCAGGTCGGCGCCCGCCCGCAGGGTGACGGCGTCCCGAACCAGCACCACGGGCAGCTG
CCCGCCGACCAGGTGGCGCGGATCCCCGGCGGCCAGCCGCCGAGAACCGGCACGCACCGA
ATGCCACCGAACAACGGGCCAGGTGGCCGGTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro
Database:interpro:38.0
IPR003439 ABC transporter-like (Domain)
[44-167] 1.8e-15 PF00005
PF00005   ABC_tran
[5-241] 22.943 PS50893
PS50893   ABC_TRANSPORTER_2
IPR003593 AAA+ ATPase domain (Domain)
[29-225] 4.5e-14 SM00382
SM00382   ATPases associated with a variety of cellula
IPR017871 ABC transporter, conserved site (Conserved_site)
[141-155] PS00211
PS00211   ABC_TRANSPORTER_1
SignalP
[1-34] 0.186 Signal
Eukaryota   
TMHMM No significant hit
Rifam_00020 Rifam_00020   Rifam_00040 Rifam_00040
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