Rifam_00040 : CDS information

Location

Organism	Amycolatopsis mediterranei
Strain	S699
Entry name	Rifamycin
Contig	AF040570
Start / Stop / Direction	2,770 / 3,522 / + [in whole cluster] 2,770 / 3,522 / + [in contig]
Location	2770..3522 [in whole cluster] 2770..3522 [in contig]
Type	CDS
Length	753 bp (250 aa)

Annotation

Category	5.2 function unknown
Product	YrbE family protein
Product (GenBank)	putative ABC-transporter integral membrane protein
Gene
Gene (GenBank)
EC number
Keyword	mce operon
Note
Note (GenBank)	ORF22
Reference	ACC Q7BUF4 comment [PMID: 9512878, 9497318, 11278540] UniProtに登録されているこれらの論文には、図表を含め、このORFについての記述がない。その他にも記載論文なし。
Related Reference	ACC O53546 PmId [21345183] Single nucleotide polymorphism in the genes of mce1 and mce4 operons of Mycobacterium tuberculosis: analysis of clinical isolates and standard reference strains. (BMC Microbiol. , 2011) comment 31st, 52%, 4e-67 Mycobacterium tuberculosis_yrbE4A CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE4A

Sequence

>YrbE family protein [putative ABC-transporter integral membrane protein]
MLRETGNLFALGLDIVRGLFQRPFQLREFIQQSWFIASVTILPTALVAIPFGAVISLQFG
SLARQLGAQSYTGAGSVLATVQQASPLVTALLVAGAGGSAVCADIGARTIREEIAAMEVL
GVSAVQRLIVPRTLAMMLVALLLNGMVSVIGVLGGYFFNVVLQGGTPGAYLASFSALAQL
PDLWVGELKALIFGFIAAVVASYRGLNPSGGPKGVGDAVNQSVVITFLLLFVVNFVITLI
YLQIVPGKLD

>YrbE family protein [putative ABC-transporter integral membrane protein]
ATGCTCCGCGAGACCGGGAACCTGTTCGCTCTCGGCCTGGACATCGTCCGCGGCCTGTTC
CAGCGCCCGTTCCAGCTGCGGGAGTTCATCCAGCAGTCGTGGTTCATCGCGAGCGTGACG
ATCCTGCCGACGGCCCTGGTGGCCATCCCGTTCGGTGCCGTCATCTCGCTGCAGTTCGGG
TCGCTCGCCCGCCAGCTGGGCGCGCAGTCCTACACCGGCGCGGGCTCCGTGCTCGCCACC
GTGCAGCAGGCCAGTCCGCTGGTCACCGCGCTGCTGGTGGCGGGTGCGGGCGGCTCCGCC
GTCTGCGCCGACATCGGCGCCCGGACCATCCGCGAAGAGATCGCCGCGATGGAGGTGCTC
GGCGTCTCCGCGGTGCAGCGGCTGATCGTGCCGCGCACCCTCGCGATGATGCTGGTCGCG
CTCCTGCTCAACGGCATGGTCAGCGTCATCGGCGTGCTCGGCGGCTACTTCTTCAACGTC
GTGCTGCAGGGCGGGACGCCGGGTGCGTACCTGGCGAGCTTCTCCGCCCTCGCGCAGCTG
CCCGACCTCTGGGTCGGCGAGCTCAAGGCGCTGATCTTCGGGTTCATCGCCGCCGTCGTC
GCGTCCTACCGGGGCCTGAACCCCTCCGGCGGCCCGAAGGGCGTCGGGGACGCGGTGAAC
CAGTCGGTGGTCATCACGTTCCTGCTGCTGTTCGTCGTGAACTTCGTGATCACCCTGATC
TACCTGCAGATCGTGCCCGGAAAGCTGGACTAG

Feature

BLASTP Database:UniProtKB:2011_09	show BLAST table
InterPro Database:interpro:38.0	IPR003453 Permease domain (Domain) PF02405 Permease
SignalP	Eukaryota
TMHMM	Transmembrane 5

Rifam_00030 Rifam_00050