Rifam_00040 Rifam_00040   Rifam_00060 Rifam_00060

Rifam_00050 : CDS information

close this sectionLocation

Organism
StrainS699
Entry nameRifamycin
Contig
Start / Stop / Direction3,527 / 4,363 / + [in whole cluster]
3,527 / 4,363 / + [in contig]
Location3527..4363 [in whole cluster]
3527..4363 [in contig]
TypeCDS
Length837 bp (278 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.2 function unknown
ProductYrbE family protein
Product (GenBank)putative ABC-transporter permease
Gene
Gene (GenBank)
EC number
Keyword
  • mce operon
Note
Note (GenBank)
  • ORF23
Reference
ACC
comment
[PMID: 9512878, 9497318, 11278540]UniProtに登録されているこれらの論文には、図表を含め記述がない。その他にも記載論文なし。
Related Reference
ACC
O53545
PmId
[21345183] Single nucleotide polymorphism in the genes of mce1 and mce4 operons of Mycobacterium tuberculosis: analysis of clinical isolates and standard reference strains. (BMC Microbiol. , 2011)
comment
95th, 50%, 2e-61
Mycobacterium tuberculosis_yrbE4B
CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE4B

close this sectionSequence

selected fasta
>YrbE family protein [putative ABC-transporter permease]
MTFLQGAKRVVNRPLQTLDTLGDQMSFYGRALLWTPRTLRRYTKEVLRLLAEVSFGSGSL
AVIGGTVGVMVGLTLFTGVLVGLQGYSALNSIGTSAFTGFLTAFFNTREIAPLVAGLALS
ATVGAGFTAQLGAMRISEEIDALEVMGVPSLPYLVTTRIIAGFVAVIPLYIIGLLSSYLA
SRLVVIYIYHQSAGTYDHYFDLFLPPQDVLYSFIKVLLFSVLIILSHCYFGYRATGGPAG
VGVAVGKAVRLSIVTVSIMNFFIGFAIWGTDVTVRIAG
selected fasta
>YrbE family protein [putative ABC-transporter permease]
ATGACGTTCCTCCAGGGCGCGAAACGCGTCGTCAACCGACCCCTCCAGACACTGGACACC
TTGGGTGACCAGATGTCGTTCTACGGCCGCGCGCTGCTGTGGACGCCGCGGACGCTGCGC
CGCTACACCAAAGAGGTGCTCCGGCTGCTGGCCGAGGTGAGCTTCGGGTCCGGCTCGCTG
GCGGTCATCGGCGGCACGGTGGGCGTGATGGTCGGCCTGACGCTGTTCACCGGTGTCCTC
GTCGGCCTCCAGGGCTATTCGGCGCTGAACTCGATCGGGACGTCGGCCTTCACCGGCTTC
CTGACCGCGTTCTTCAACACGCGCGAGATCGCCCCGCTGGTCGCCGGGCTCGCCCTGAGC
GCCACCGTCGGCGCCGGGTTCACCGCGCAGCTGGGCGCCATGCGGATCTCGGAGGAGATC
GACGCACTGGAAGTCATGGGTGTGCCGAGCCTGCCGTACCTGGTGACGACGCGGATCATC
GCCGGGTTCGTCGCGGTCATCCCGCTCTACATCATCGGCCTGCTGAGCTCGTACCTCGCG
TCGAGACTGGTCGTGATCTACATCTACCACCAGTCGGCCGGTACCTACGACCACTACTTC
GACCTGTTCCTGCCCCCGCAGGACGTGCTGTATTCGTTCATCAAGGTGCTGCTGTTCAGC
GTCCTGATCATCCTGTCGCACTGCTACTTCGGGTACCGGGCGACCGGTGGCCCGGCCGGG
GTCGGCGTCGCGGTCGGCAAGGCCGTGCGGCTGTCCATCGTCACGGTGTCGATCATGAAC
TTCTTCATCGGGTTCGCCATCTGGGGAACCGACGTCACGGTAAGGATCGCGGGATGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro
Database:interpro:38.0
IPR003453 Permease domain (Domain)
[45-264] 1.2e-64 PF02405
PF02405   Permease
SignalP No significant hit
TMHMM
[49-71] Transmembrane (i-o) [86-105] Transmembrane (o-i) [112-134] Transmembrane (i-o) [154-176] Transmembrane (o-i) [183-200] Transmembrane (i-o) [210-232] Transmembrane (o-i) [248-270] Transmembrane (i-o)
Transmembrane 7   
Rifam_00040 Rifam_00040   Rifam_00060 Rifam_00060
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