Rifam_00070
Rifam_00080 : CDS information
Location
| Organism | Amycolatopsis mediterranei |
|---|---|
| Strain | S699 |
| Entry name | Rifamycin |
| Contig | AF040570 |
| Start / Stop / Direction | 6,707 / 7,693 / + [in whole cluster] 6,707 / 7,693 / + [in contig] |
| Location | 6707..7693 [in whole cluster] 6707..7693 [in contig] |
| Type | CDS |
| Length | 987 bp (328 aa) |
Annotation
| Category | 5.2 function unknown |
|---|---|
| Product | mammalian cell entry family protein |
| Product (GenBank) | putative lipoprotein |
| Gene | |
| Gene (GenBank) | |
| EC number | |
| Keyword |
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| Note | |
| Note (GenBank) |
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| Reference |
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| Family/Domain |
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Sequence
>mammalian cell entry family protein [putative lipoprotein] MKSFQKRNPVPIALVGIVVLALAFTAALNSDDLPVIGGGTTYSAEFSEASGLQKDNDVRI AGVKVGKVSDIALDGASVKVSFKVKDAWLGDRTSAAIKIKTLLGQKYLSLDPQGETALNP GTGIPRDRTMAPYDVLDAFRGLSQTVDNIDTKQLAQSFDTISQTFANTPQDVKGALSGLS KLSDTIASRDQQLSNLLANTRQVSQTLVDRDAEVQKLLDDGNDLLAELAKREDAITALLD GSRELATQLQGLIDDNGKQLDPVLTQLDQLTSMLQRNQDSLAEGLKKFAPFIRVFTNTIG NGRWFDNYICGLLLPSFGPINEEGCYTK
>mammalian cell entry family protein [putative lipoprotein] ATGAAGTCCTTCCAGAAGCGCAACCCCGTGCCGATCGCGCTGGTCGGGATCGTCGTGCTG GCGCTCGCCTTCACCGCCGCGCTCAACTCCGACGACCTGCCGGTGATCGGCGGGGGCACC ACCTACAGCGCCGAGTTCAGCGAGGCTTCCGGGCTGCAGAAGGACAACGACGTCCGGATC GCCGGCGTCAAGGTCGGCAAGGTCAGCGACATCGCGCTCGACGGCGCGTCGGTGAAGGTG TCTTTCAAGGTCAAGGACGCCTGGCTGGGCGACCGGACCAGTGCCGCGATCAAGATCAAG ACGTTGCTCGGGCAGAAGTACCTGTCGCTGGACCCGCAGGGTGAGACCGCGCTGAACCCG GGCACCGGCATCCCGCGCGACCGCACGATGGCACCCTACGACGTGCTCGACGCCTTCCGC GGGCTGTCCCAGACCGTCGACAACATCGACACCAAGCAGCTGGCGCAGAGCTTCGACACG ATCTCGCAGACCTTCGCCAACACGCCGCAGGACGTGAAGGGCGCGCTGTCGGGGCTGTCG AAGCTGTCGGACACGATCGCCTCGCGCGACCAGCAGCTGTCGAACCTGCTGGCCAACACC CGCCAGGTGTCGCAGACGCTGGTCGACCGCGACGCCGAGGTGCAGAAGCTGCTCGACGAC GGCAACGACCTGCTCGCCGAGCTGGCCAAGCGCGAGGACGCGATCACCGCGCTGCTGGAC GGCTCCCGCGAGCTGGCCACCCAGCTGCAGGGCCTGATCGACGACAACGGAAAGCAGCTC GACCCGGTGCTGACCCAGCTCGACCAGCTGACGTCGATGCTGCAGCGCAACCAGGACTCC CTCGCCGAGGGGCTCAAGAAGTTCGCGCCGTTCATCCGCGTCTTCACCAACACCATCGGC AACGGCCGCTGGTTCGACAACTACATCTGCGGCCTGCTGCTGCCGTCGTTCGGCCCGATC AACGAAGAGGGGTGCTACACGAAATGA
Feature
| BLASTP Database:UniProtKB:2011_09 |
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|---|---|
| InterPro Database:interpro:38.0 |
IPR003399 Mammalian cell entry-related (Domain)
IPR005693 Mammalian cell entry (Family)
IPR008360 Mammalian cell entry, mce1C (Family)
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| SignalP |  ![[1-27] 0.888 Signal](../../img/R.gif "[1-27] 0.888 Signal"){kind=small} |
| TMHMM | ![[9-28] Transmembrane (i-o)](../../img/C.gif "[9-28] Transmembrane (i-o)"){kind=small} |
![[39-112] 5.6e-15 PF02470](../../img/H.gif "[39-112] 5.6e-15 PF02470"){kind=small}
![[12-291] 7.1e-62 TIGR00996](../../img/T.gif "[12-291] 7.1e-62 TIGR00996"){kind=small}
![[28-48] 9.7e-14 PR01782](../../img/F.gif "[28-48] 9.7e-14 PR01782"){kind=small}
