Urd_00050 : CDS information

Location

Organism	Streptomyces fradiae
Strain	Tü2717
Entry name	Urdamycin
Contig	AF164961
Start / Stop / Direction	7,048 / 5,846 / - [in whole cluster] 7,048 / 5,846 / - [in contig]
Location	complement(5846..7048) [in whole cluster] complement(5846..7048) [in contig]
Type	CDS
Length	1,203 bp (400 aa)

Annotation

Category	5.1 general function
Product	putative transposase
Product (GenBank)	integrase
Gene
Gene (GenBank)	urd-Int
EC number
Keyword
Note
Note (GenBank)	Urd-Int; uses GTG start codon
Reference	ACC Q9RPA0 comment UniProtで登録されている[PMID: 10658661](2000)にこのORFについての記載はない。 [PMID: 11094336](2000)のFigure 2に図示されているが詳細記載なし。
Family/Domain	FD IPR003346, IPR002525 comment [IPR003346] Transposase, IS116/IS110/IS902 (Family) [IPR002525] Transposase, IS111A/IS1328/IS1533, N-terminal (Domain) function; DNA binding, transposase activity

Sequence

>putative transposase [integrase]
MNERKTQVWAGVDAGKGHHWTAVVDETGATLWSKKVDNDESAILTALGEILDLADEVHWA
VDISGTSSALLLALLAAHGQQAVYVPGGTVNRMSGAYRGEAKTDARDTYVIAETARHRND
FTAIDVPAQLAVDLALLTAHRTDLVADRVRMINRLRDVLTGVFPALERAFDYSAHKGALV
LLTGYQTPAAIRRRGRARLTAWLANRGVRGADAVAETALAAAQAQQTALPGEDVAAQIVA
ELAGQLLALDDRMKRIDKQIRETFRSHPQAEIIDSLPGMGPILGAEFVVAVGDLSAYADA
GHLASAAGLVPVPRDSGRRTGNLHRPKRYSRRLRRVFYMSAQTSMTREGPNRDFYLKKRG
EGCQHIQAVIALARRRASVLWALLRDNRVFTPAPPVTQAA

>putative transposase [integrase]
GTGAACGAGCGGAAGACCCAGGTCTGGGCCGGTGTCGATGCCGGCAAGGGCCACCACTGG
ACGGCGGTGGTCGACGAGACCGGCGCGACCCTGTGGTCGAAGAAGGTCGACAACGACGAG
TCGGCGATCCTGACGGCGCTCGGCGAGATCCTGGACCTGGCCGACGAGGTCCACTGGGCG
GTCGACATCTCCGGCACGTCCTCCGCGCTGCTGCTGGCCCTGCTCGCGGCCCATGGCCAG
CAGGCCGTCTACGTGCCTGGCGGCACGGTCAACCGCATGTCGGGCGCATACCGGGGCGAG
GCCAAGACCGACGCCCGTGACACCTACGTCATCGCCGAGACCGCCCGCCACCGCAACGAC
TTCACCGCCATCGACGTGCCCGCCCAGCTGGCCGTCGACCTCGCGCTGCTGACCGCCCAC
CGCACCGACTTGGTGGCCGACCGCGTGCGGATGATCAACCGCCTGCGCGACGTGCTGACT
GGCGTCTTCCCCGCACTGGAGCGGGCTTTCGACTACTCGGCCCACAAAGGCGCGCTCGTC
CTGCTGACGGGCTACCAGACCCCGGCCGCGATCCGCCGCCGCGGCCGGGCGAGGCTGACG
GCCTGGCTGGCCAACCGCGGCGTGCGTGGGGCCGACGCGGTCGCCGAGACCGCACTGGCA
GCAGCCCAAGCCCAGCAGACCGCGCTGCCCGGTGAGGACGTCGCCGCACAGATCGTGGCC
GAACTGGCCGGGCAGCTCCTGGCCCTGGACGACCGGATGAAGCGCATCGACAAGCAGATC
CGCGAGACGTTCCGCAGTCATCCGCAGGCGGAGATCATCGATTCGCTGCCCGGTATGGGC
CCGATACTCGGAGCCGAGTTCGTTGTGGCCGTCGGCGACCTGTCGGCCTACGCCGACGCC
GGCCACCTGGCATCGGCGGCCGGGCTGGTGCCCGTCCCGCGTGACTCCGGTCGCCGGACC
GGCAACCTCCACCGGCCCAAGCGCTACAGCCGACGCCTGCGCAGGGTGTTCTACATGTCC
GCGCAGACGAGCATGACCCGCGAAGGACCGAACCGGGACTTCTACCTGAAGAAGCGCGGC
GAGGGCTGCCAACACATCCAGGCCGTCATCGCCCTGGCCCGCCGACGAGCCAGCGTGTTG
TGGGCCCTGCTGCGTGACAACCGGGTATTCACCCCCGCCCCGCCGGTCACGCAAGCAGCT
TGA

Feature

BLASTP Database:UniProtKB:2011_09	show BLAST table
InterPro Database:interpro:38.0	IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal (Domain) PF01548 DEDD_Tnp_IS110 IPR003346 Transposase, IS116/IS110/IS902 (Family) PF02371 Transposase_20
SignalP	No significant hit
TMHMM	No significant hit

Urd_00040 Urd_00060