Avil_00520 : CDS information

Location

Organism	Streptomyces viridochromogenes
Strain	Tü57
Entry name	Avilamycin
Contig	AF333038
Start / Stop / Direction	52,147 / 54,519 / + [in whole cluster] 52,147 / 54,519 / + [in contig]
Location	52147..54519 [in whole cluster] 52147..54519 [in contig]
Type	CDS
Length	2,373 bp (790 aa)

Annotation

Category	5.4 hypothetical protein
Product	hypothetical protein
Product (GenBank)
Gene	aviX14
Gene (GenBank)
EC number
Keyword
Note	It is supposed that this ORF is not involved in avilamycin biosynthesis.
Note (GenBank)
Reference	PmId [11410376] Biosynthesis of the orthosomycin antibiotic avilamycin A: deductions from the molecular analysis of the avi biosynthetic gene cluster of Streptomyces viridochromogenes Tu57 and production of new antibiotics. (Chem Biol. , 2001) comment avilamycin A生合成遺伝子クラスターの報告。 AviX14:Putative helicase from S. coelicolor A(3)2[Proposed function:Unknown] このORFの機能解析はされていない。 avi gene clusterの境界決定のための実験をしていないが、AviRb-AviZ2が生合成遺伝子だと記述している。

Sequence

>hypothetical protein
MRERGERGGGAMGRSEREAVARGGRLHEAAQAVVDDHARAVEAVRAALEPIHEQLARREL
EVIPVARLSDLTEGRLRLGEVEKGGFRTVGQVLDAGSYRLRQLRGVGQQTADQTVAAAQR
IAEAVRDSIAVHIDVDRPEPRTTALVVALHVLVEAGPEARRAVEAGGALTKKLGPLLAEA
GPAAGRLRMLFAGRAARGRALAAVAEIRALTEQADHDGVPPLLAQASVDLLRRPGSEVAA
LVDFELRSAEYYGLLAELSGRAPDPAAAEGFLPDEVAERVRTQALDDTHRRVSLRGYQAF
GTRFALAQRRTILGDEMGLGKTIQAIAALAHLAAEGQSHFMVVCPASVLINWTRETEKRS
VLRVTPLHGPDRQDAFADWKGRGGVAVTTFDALRGFPAPGGGEVGMLVVDEAHYVKNPRT
RRSMAVSEWAEHCDRVLFLTGTPMENRVEEFRSLVRILQPELAEAIDEHDGVAGSKAFRK
AVAPVYLRRNQQDVLTELPALQHTDEWEEPSTADEEAYREAVRAGNFMAMRRAAYARPER
SAKVHRLREIAEEAAENGLKVVVFSAFRDVLAVVREALTDAAGPGAEAGPQDEPGSEEGR
ATADARGPAVERAATPDTPGQEEIAAVRDTPAPTERTGPRRVPGPRAGRVFGPISGSVPP
ARRQQLVDDFAAAPGHAVLLAQIEAGGVGLNMQAASVVILCEPQLKPTVEHQAVARAHRM
GQVRSVRVHRLLCTEGVDERLVRMLENKSRLFDAYARRSAVAESTPDAVDISDLALARHI
VEEEQARLGA

>hypothetical protein
ATGCGGGAACGCGGTGAGAGGGGCGGGGGCGCGATGGGGCGGAGTGAGCGGGAGGCGGTG
GCCCGGGGCGGGCGGCTTCACGAGGCGGCGCAGGCGGTGGTCGACGATCACGCACGCGCC
GTCGAGGCCGTACGGGCGGCCCTGGAACCGATCCATGAGCAACTGGCCCGGCGCGAGCTG
GAGGTCATCCCGGTGGCCCGGCTGTCGGACCTCACCGAGGGCAGGCTGCGCCTGGGGGAG
GTGGAGAAGGGCGGGTTCCGGACGGTCGGCCAGGTGCTCGACGCCGGCTCGTACCGGCTG
CGCCAGCTCCGCGGGGTCGGGCAGCAGACCGCCGACCAGACGGTGGCCGCCGCCCAGCGG
ATCGCCGAGGCTGTACGGGACAGCATCGCCGTACACATCGACGTGGACAGGCCCGAGCCC
CGGACCACCGCACTGGTCGTCGCGCTGCACGTGCTGGTGGAGGCGGGCCCCGAGGCACGC
CGGGCCGTCGAGGCGGGCGGGGCGCTGACGAAGAAGCTCGGCCCGCTGCTGGCCGAGGCG
GGGCCGGCGGCAGGCCGGCTGCGCATGCTGTTCGCGGGGCGGGCCGCACGGGGACGGGCG
CTGGCGGCCGTGGCGGAGATCCGCGCACTGACCGAGCAGGCCGACCACGACGGTGTGCCA
CCGCTGCTCGCCCAGGCCTCGGTCGACCTGCTGCGCCGCCCGGGCTCCGAGGTGGCCGCC
CTGGTCGACTTCGAGCTGCGCTCCGCCGAGTACTACGGCCTGCTCGCCGAGCTCTCGGGC
CGCGCCCCCGACCCCGCGGCGGCCGAGGGGTTCCTGCCGGACGAGGTGGCCGAGCGGGTC
AGGACCCAGGCGCTCGACGACACGCACCGCCGGGTCTCACTGCGCGGCTACCAGGCCTTC
GGCACCCGCTTCGCCCTCGCCCAGCGCCGGACGATCCTCGGCGACGAGATGGGGCTCGGC
AAGACGATCCAGGCCATCGCCGCACTCGCGCACCTAGCCGCCGAGGGGCAGAGCCACTTC
ATGGTGGTCTGTCCGGCCAGCGTGCTGATCAACTGGACCCGGGAGACCGAGAAGCGCAGT
GTGCTGCGCGTGACACCGCTGCACGGCCCCGACCGGCAGGACGCGTTCGCCGACTGGAAG
GGGCGGGGCGGCGTCGCGGTCACCACCTTCGACGCGCTGCGGGGCTTCCCGGCGCCCGGG
GGCGGCGAGGTGGGCATGCTCGTCGTGGACGAGGCCCACTACGTGAAGAATCCCCGGACC
CGCCGCTCCATGGCCGTCTCCGAGTGGGCGGAGCACTGCGACCGCGTGCTGTTCCTGACC
GGTACGCCCATGGAGAACCGCGTCGAGGAGTTCCGCAGCCTGGTGCGGATCCTCCAGCCC
GAGCTGGCGGAGGCCATCGACGAGCACGACGGCGTGGCGGGCTCCAAGGCGTTCCGCAAG
GCGGTCGCACCGGTCTATCTGCGCCGCAACCAGCAGGACGTCCTCACCGAACTCCCGGCG
CTCCAGCACACGGACGAGTGGGAGGAGCCCAGCACGGCGGACGAGGAGGCCTACCGCGAG
GCCGTGCGCGCCGGCAACTTCATGGCGATGCGCAGGGCGGCGTACGCGCGTCCGGAGCGG
TCCGCGAAGGTGCACCGGCTGCGCGAGATCGCTGAGGAGGCCGCCGAGAACGGGCTGAAG
GTCGTGGTGTTCTCCGCGTTCCGGGACGTACTGGCAGTGGTACGCGAGGCGCTCACGGAC
GCGGCCGGGCCAGGGGCGGAAGCAGGCCCGCAGGACGAGCCGGGGTCCGAAGAGGGGCGA
GCCACAGCGGATGCGCGGGGCCCGGCGGTGGAAAGGGCAGCCACGCCGGACACGCCGGGC
CAGGAGGAGATCGCCGCCGTACGGGACACACCGGCGCCGACGGAGCGGACGGGGCCGCGC
AGGGTGCCGGGACCGCGGGCCGGGCGTGTGTTCGGGCCGATCTCGGGCAGCGTGCCGCCC
GCCCGCCGACAGCAGCTCGTCGACGACTTCGCCGCCGCGCCCGGTCACGCCGTACTGCTC
GCGCAGATCGAGGCAGGCGGAGTGGGCCTCAACATGCAGGCCGCCTCCGTGGTGATCCTC
TGCGAGCCGCAGCTCAAGCCGACCGTCGAACACCAGGCGGTCGCCCGTGCCCACCGCATG
GGCCAGGTCCGCTCGGTCCGCGTGCACCGCCTGCTCTGCACGGAAGGGGTGGACGAACGC
CTGGTGCGGATGCTGGAGAACAAGTCCCGCCTGTTCGACGCTTACGCCCGCCGCAGCGCG
GTCGCCGAGTCGACACCGGACGCCGTCGACATCTCGGACCTCGCCCTGGCCCGCCACATC
GTGGAGGAGGAACAGGCACGGTTGGGGGCGTGA

Feature

BLASTP Database:UniProtKB:2011_09	show BLAST table
InterPro Database:interpro:38.0	IPR000330 SNF2-related (Domain) PF00176 SNF2_N IPR001650 Helicase, C-terminal (Domain) PS51194 HELICASE_CTER SM00490 helicase superfamily c-terminal domain PF00271 Helicase_C IPR014001 Helicase, superfamily 1/2, ATP-binding domain (Domain) PS51192 HELICASE_ATP_BIND_1 SM00487 DEAD-like helicases superfamily
SignalP	No significant hit
TMHMM	No significant hit

Avil_00510 Avil_00530