Avil_00520 Avil_00520   Avil_00540 Avil_00540

Avil_00530 : CDS information

close this sectionLocation

Organism
StrainTü57
Entry nameAvilamycin
Contig
Start / Stop / Direction55,545 / 54,718 / - [in whole cluster]
55,545 / 54,718 / - [in contig]
Locationcomplement(54718..55545) [in whole cluster]
complement(54718..55545) [in contig]
TypeCDS
Length828 bp (275 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.1 general function
Productputative DNA-binding protein
Product (GenBank)
GeneaviX15
Gene (GenBank)
EC number
Keyword
Note
  • It is supposed that this ORF is not involved in avilamycin biosynthesis.
Note (GenBank)
Reference
PmId
[11410376] Biosynthesis of the orthosomycin antibiotic avilamycin A: deductions from the molecular analysis of the avi biosynthetic gene cluster of Streptomyces viridochromogenes Tu57 and production of new antibiotics. (Chem Biol. , 2001)
comment
avilamycin A生合成遺伝子クラスターの報告。

AviX15:Putative DNA-binding protein from S. coelicolor A(3)2 [Proposed function:Unknown]

このORFの機能解析はされていない。
avi gene clusterの境界決定のための実験をしていないが、AviRb-AviZ2が生合成遺伝子だと記述している。
Related Reference
ACC
Q9FDT3
PmId
comment
Streptomyces lividans_cpb1
Chitinase promoter binding protein 1

S. lividansでChitinase（ChiA)のプロモータに結合する因子を単離した論文。
Cpb1は、他の主要なregulatorsの機能を補助または修飾することにより、chitinase遺伝子発現において補助的因子として働くかもしれない。
Family/Domain
FD
IPR001387
comment
[IPR001387] Helix-turn-helix type 3 (Domain)

close this sectionSequence

selected fasta
>putative DNA-binding protein
MNSKKLPRKKNLSTMRMVGKQMQAARKAAGFTQSSLGKAVLADEETIASIEQGRRPLLLE
LAQALDELLDTKGTLAAGVENMPEIDQFPLFAEQYMVHEREAISLCWYDNAVLPGLLQTR
DYARAVLRERVPPYDEDELEAKTEGRIERQEILHRKCPPMMSFIVWEPVLYIELGGPKVH
RDQLRHLRECAELPGLALQFLPMRTSAHAGLDGPFTLLETPDHQHLAYTESQRGSQWVSG
PDEVSILARKYAMLRSQAMTPQESKSLLDRLVGDK
selected fasta
>putative DNA-binding protein
ATGAACTCCAAGAAGCTGCCGCGGAAGAAGAACCTGTCGACCATGCGGATGGTGGGCAAG
CAGATGCAGGCCGCCCGCAAGGCGGCGGGCTTCACGCAGAGTTCCCTGGGCAAAGCGGTC
CTCGCCGACGAGGAGACCATCGCGTCGATCGAACAGGGGAGGCGGCCCCTGCTGCTCGAA
CTCGCCCAGGCGCTGGACGAACTCCTCGACACGAAGGGCACGTTGGCTGCCGGGGTCGAG
AACATGCCGGAGATCGACCAGTTCCCGCTGTTCGCGGAGCAGTACATGGTGCACGAGCGG
GAGGCCATCTCCCTGTGCTGGTACGACAACGCCGTCCTGCCCGGCCTGCTCCAGACCCGC
GACTACGCCCGCGCGGTCCTGCGCGAGCGCGTACCGCCGTACGACGAGGACGAGCTGGAA
GCCAAGACGGAGGGTCGCATCGAACGCCAGGAGATCCTGCACCGCAAGTGCCCGCCGATG
ATGAGCTTCATCGTGTGGGAGCCGGTGCTGTACATCGAACTCGGGGGGCCGAAAGTCCAC
CGCGACCAGCTCCGCCACCTACGCGAGTGCGCCGAACTCCCGGGGCTCGCCCTCCAGTTT
CTACCCATGCGCACCTCCGCACACGCCGGACTGGACGGCCCCTTCACCCTCCTGGAGACG
CCCGATCACCAGCACCTGGCCTACACCGAGAGCCAACGTGGCAGCCAGTGGGTTTCTGGC
CCGGACGAGGTGTCCATCCTGGCGCGCAAGTATGCGATGCTGCGGTCACAGGCCATGACT
CCGCAGGAGTCGAAGAGCCTGCTAGACCGTCTGGTGGGAGATAAATGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro
Database:interpro:38.0
IPR001387 Helix-turn-helix type 3 (Domain)
[22-72] 9.677 PS50943
PS50943   HTH_CROC1
[21-76] 0.003 SM00530
SM00530   Helix-turn-helix XRE-family like proteins
IPR010982 Lambda repressor-like, DNA-binding domain (Domain)
[5-70] 2.9e-06 G3DSA:1.10.260.40
G3DSA:1.10.260.40   no description
[12-89] 1.2e-07 SSF47413
SSF47413   lambda repressor-like DNA-binding domains
SignalP No significant hit
TMHMM No significant hit
Avil_00520 Avil_00520   Avil_00540 Avil_00540
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