Herb_00020 Herb_00020   Herb_00040 Herb_00040

Herb_00030 : CDS information

close this sectionLocation

Organism
StrainAM 3672
Entry nameHerbimycin A
Contig
Start / Stop / Direction3,745 / 2,762 / - [in whole cluster]
3,745 / 2,762 / - [in contig]
Locationcomplement(2762..3745) [in whole cluster]
complement(2762..3745) [in contig]
TypeCDS
Length984 bp (327 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)unknown
Gene
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
  • ORF3p; ORF3; similar to Pseudomonas aeruginosa PA2234 PvcA and Vibrio cholerae VC1949
Reference
ACC
PmId
[16085885] Insights into the biosynthesis of the benzoquinone ansamycins geldanamycin and herbimycin, obtained by gene sequencing and disruption. (Appl Environ Microbiol. , 2005)
comment
herbimycin生合成系gene clusterのクローニングを行い、同じbenzoquinone ansamycin系のgeldanamycin のgene clusterと比較し、一部の遺伝子欠損株を作成してその生合成における関与を調べた文献。

ORF03(984bp):homolog of PvcA (Pseudomonas aeruginosa PA2234) and of Vibrio cholerae VC1949
機能実験、詳細記載無し。

close this sectionSequence

selected fasta
>hypothetical protein [unknown]
MPPCPRRAYPHGGTHLMPLTTAPDTRSTSGMSAAILDLLLPYHRTTDPTPTAAESFAHQL
RQIGGFVRAGEPVVLTLPGFPCKSPNPAKVLGHLPDQGERLSLGFLNTLCEEIERVHPPG
ARVIICSDGHVFGDLIRVPDDHIDAYANELRRLIRELALHRLSVFDLRDILGDLPHHTKR
AQVHERYAPTLEALRAEVRSEDHTLALYRGITRFLVDDTADFTGTRSALQRACRTRAYGV
IQRSRAWGDLIAEHHPGSVRLSIHPQPIGAAKFGIRLLDAADVWTTPWHSAALHRTDGTW
TLMPRARAERLGRLVHRDGRPSHYEQG
selected fasta
>hypothetical protein [unknown]
ATGCCCCCATGCCCGCGTCGCGCATACCCTCACGGAGGAACCCACCTCATGCCGCTGACG
ACCGCACCGGACACCCGCTCCACGAGCGGCATGAGCGCCGCCATCCTGGACCTGCTGCTG
CCGTACCACCGCACGACCGACCCCACGCCCACGGCGGCGGAGTCGTTCGCGCACCAGTTG
CGCCAGATCGGCGGGTTCGTCCGCGCCGGAGAACCCGTGGTCCTCACCCTGCCCGGCTTC
CCCTGCAAGTCGCCCAACCCCGCCAAGGTTCTCGGCCACCTCCCCGACCAGGGCGAACGC
CTCTCCCTCGGCTTTCTGAACACCCTGTGCGAGGAGATCGAGCGGGTCCACCCGCCGGGC
GCCCGCGTGATCATCTGCTCCGACGGCCATGTCTTCGGCGACCTGATCCGCGTCCCGGAT
GACCACATAGACGCCTACGCAAACGAACTCAGACGCCTCATACGGGAGTTGGCACTGCAC
CGCCTCTCCGTCTTCGACCTGCGCGACATCCTGGGCGACCTGCCCCACCACACCAAGCGC
GCCCAGGTGCACGAGCGGTACGCCCCCACCCTGGAGGCGCTGCGAGCCGAGGTCCGCTCC
GAGGACCACACCCTCGCCCTGTACCGGGGCATCACCCGGTTCCTCGTCGACGACACCGCC
GACTTCACCGGCACCCGCTCCGCCCTCCAACGCGCATGCCGCACCCGTGCCTACGGCGTC
ATCCAGCGCAGCCGGGCCTGGGGCGACCTGATCGCCGAACACCACCCCGGCTCCGTACGG
CTGTCCATCCACCCCCAGCCCATCGGCGCCGCCAAATTCGGCATCCGCCTCCTGGACGCC
GCCGATGTCTGGACCACCCCCTGGCATTCGGCCGCCCTGCACCGCACCGACGGCACCTGG
ACGCTCATGCCCCGCGCCCGCGCGGAGCGGCTCGGCCGTCTCGTCCACCGTGACGGCAGA
CCGAGCCACTATGAACAGGGCTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09 		show BLAST table
InterPro
Database:interpro:38.0
IPR007817 Pyoverdine biosynthesis (Domain)
[63-318] 2.09999999999996e-86 PF05141
PF05141   DIT1_PvcA
IPR017133 Pyoverdine chromophore biosynthesis protein PvcA (Family)
[1-326] 6.4999795054176e-108 PIRSF037196
PIRSF037196   Pyoverdine_chromoph_PvcA
SignalP No significant hit
TMHMM No significant hit
Herb_00020 Herb_00020   Herb_00040 Herb_00040
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