Virg_00350
Virg_00360 : CDS information
Location
| Organism | Streptomyces virginiae |
|---|---|
| Strain | MAFF 10-06014 |
| Entry name | Virginiamycin |
| Contig | AB019519 |
| Start / Stop / Direction | 105,024 / 106,580 / + [in whole cluster] 285 / 1,841 / + [in contig] |
| Location | 105024..106580 [in whole cluster] 285..1841 [in contig] |
| Type | CDS |
| Length | 1,557 bp (518 aa) |
Annotation
| Category | 4.3 transport |
|---|---|
| Product | virginiamycin S resistance transporter |
| Product (GenBank) | VarS |
| Gene | |
| Gene (GenBank) | varS |
| EC number | |
| Keyword |
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| Note | |
| Note (GenBank) |
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| Reference |
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| Related Reference |
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Sequence
>virginiamycin S resistance transporter [VarS] MQDTQITAAPVPARNPRRWVILGVICLAQLVVLLDNTVLNLAIPALTEDLGASTTDIQWM INAYALVQSGLLLTAGSLSDRYGRKKALITGLVAFGLCSTAAAFSASSGQLIAARAGMGI GGALLMTTTLAVIMQVFDGEELPKAIGMWGAVSSLGFAGGPLVGGVLLAHFWWGSIFLIN IPVALIGGLAVAKLVPESKNPLGKRPDLVGAVLSTVGMVGVVFAIISGPEHGWTSVSVLV SALVGLASLTAFVRWELHVPAPMLDMSFFRNRRFNGAVAGGILVAFGMAGSLFLLTQHLQ LVLNYSPLEAGLRMAPLALTIVGLNLAGVGAKVLPKLGAAGTITSGMTLLAGGLAAVATV GGSLGYSGMLVGLVLMGSGIALAMRPEWANAIMGSIPPEKAGVGAGVQGTITEFGGGLGV AVLGAVLNSRFAALLPATVGGRHGRGSLHEALAADPSEDVQEQVRDAFASGVGTSQLIGA AAVFAGGLLAGLLLHRAARAEAAAAETSAVPAGDKAAA
>virginiamycin S resistance transporter [VarS] TTGCAAGACACACAGATCACGGCGGCGCCTGTACCGGCCCGCAACCCCAGGCGCTGGGTG ATCCTCGGCGTCATCTGCCTCGCCCAACTCGTCGTCCTCCTGGACAACACGGTCCTGAAC CTCGCGATCCCCGCGCTCACCGAGGACCTGGGCGCGAGCACGACGGACATCCAGTGGATG ATCAACGCCTATGCGTTGGTCCAGTCCGGCCTGCTGCTCACCGCCGGAAGCCTCAGCGAC CGGTACGGCCGCAAGAAGGCGCTGATCACGGGTCTGGTCGCATTCGGCCTGTGCTCGACG GCCGCGGCCTTCAGCGCGTCGTCCGGCCAGCTGATCGCCGCCCGTGCGGGCATGGGCATC GGCGGCGCCCTGCTCATGACCACCACCCTCGCGGTGATCATGCAGGTGTTCGACGGCGAG GAACTGCCGAAGGCGATCGGTATGTGGGGTGCCGTCAGCTCGCTCGGCTTCGCCGGCGGC CCCCTGGTGGGCGGCGTTCTGCTGGCCCACTTCTGGTGGGGCTCGATCTTCCTGATCAAC ATCCCGGTGGCGCTGATCGGCGGGCTGGCCGTCGCCAAGCTCGTCCCGGAGAGCAAGAAC CCGCTGGGCAAGCGCCCGGACCTGGTCGGCGCCGTACTTTCCACGGTCGGCATGGTCGGC GTGGTCTTCGCGATCATCTCCGGCCCTGAGCACGGCTGGACGTCCGTCAGCGTGCTGGTA TCGGCCCTGGTCGGCCTGGCAAGCCTCACCGCCTTCGTCCGCTGGGAGTTGCACGTCCCG GCGCCGATGCTCGACATGAGCTTCTTCCGCAACCGGCGCTTCAACGGCGCCGTGGCCGGC GGCATCCTCGTCGCGTTCGGCATGGCGGGCTCGCTGTTCCTGCTCACGCAGCACCTGCAG CTCGTCCTGAACTACAGCCCGTTGGAAGCCGGCCTGCGCATGGCTCCGCTCGCCTTGACC ATCGTCGGACTCAACCTGGCGGGTGTCGGCGCGAAGGTGCTGCCGAAGCTCGGTGCCGCC GGGACCATCACCTCCGGCATGACCCTGCTCGCCGGCGGGCTCGCGGCCGTGGCCACCGTC GGCGGCAGCCTCGGCTACAGCGGCATGCTGGTCGGCCTGGTGCTCATGGGCTCCGGCATC GCCCTGGCGATGCGGCCGGAATGGGCCAACGCCATCATGGGCTCCATCCCGCCGGAGAAG GCCGGTGTAGGAGCGGGCGTCCAGGGAACGATCACCGAATTCGGCGGCGGCCTCGGCGTC GCGGTCCTCGGTGCCGTGCTGAACTCCCGCTTCGCGGCGCTGCTCCCGGCCACCGTGGGG GGCCGGCACGGCCGGGGTTCGCTGCACGAGGCGCTCGCCGCCGACCCCTCAGAGGACGTG CAGGAACAGGTCCGGGACGCGTTCGCTTCCGGGGTCGGCACCAGCCAGCTGATCGGCGCC GCGGCAGTGTTCGCGGGCGGCCTGCTGGCCGGCCTGCTGCTCCACCGCGCGGCGCGTGCC GAGGCCGCCGCGGCGGAGACCTCCGCGGTCCCCGCCGGGGACAAGGCTGCCGCCTGA
Feature
| BLASTP Database:UniProtKB:2011_09 |
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|---|---|
| InterPro Database:interpro:38.0 |
IPR001411 Tetracycline resistance protein TetB/drug resistance transporter (Family)
IPR011701 Major facilitator superfamily (Family)
IPR016196 Major facilitator superfamily domain, general substrate transporter (Domain)
IPR020846 Major facilitator superfamily domain (Domain)
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| SignalP |  ![[1-34] 0.438 Signal](../../img/R.gif "[1-34] 0.438 Signal"){kind=small} |
| TMHMM | ![[20-42] Transmembrane (i-o)](../../img/C.gif "[20-42] Transmembrane (i-o)"){kind=small} ![[57-79] Transmembrane (o-i)](../../img/G.gif "[57-79] Transmembrane (o-i)"){kind=small} |
![[24-48] 1.89999859865864e-10 PR01036](../../img/F.gif "[24-48] 1.89999859865864e-10 PR01036"){kind=small}
![[25-419] 2.70000000000002e-51 PF07690](../../img/H.gif "[25-419] 2.70000000000002e-51 PF07690"){kind=small}
![[1-506] 1.09999184471405e-67 SSF103473](../../img/B.gif "[1-506] 1.09999184471405e-67 SSF103473"){kind=small}
![[21-499] PS50850](../../img/M.gif "[21-499] PS50850"){kind=small}
