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微生物 : Deferribacter desulfuricans

微生物株情報

NBRC番号 101012
学名 Deferribacter desulfuricans
別名（シノニム） 該当データなし
由来 JAMSTEC (K. Takai, SSM1)
他保存機関番号 JCM 11476=DSM 14783
他株番号 SSM1
参考文献
12807210
Deferribacter desulfuricans sp. nov., a novel sulfur-, nitrate- and arsenate-reducing thermophile isolated from a deep-sea hydrothermal vent. (Int J Syst Evol Microbiol. 2003)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseDEFDS_1118
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseDEFDS_0409
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseDEFDS_1301
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseDEFDS_1299
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDDEFDS_1298
BIOB
(NRULE_0185)
Biotin synthaseDEFDS_1300
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseDEFDS_0908
Metal-binding protein(NFUNC_0105)
必須C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinDEFDS_2180 DEFDS_0825
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikRDEFDS_1941
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinDEFDS_2180 DEFDS_0825
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseDEFDS_0845
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseDEFDS_0843
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseDEFDS_2126
PANC
(NRULE_0118)
Pantothenate synthetaseDEFDS_0844
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseDEFDS_1098
RIBA
(NRULE_0201)
GTP cyclohydrolase-2DEFDS_1098
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDDEFDS_1096
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseDEFDS_1099
RIBE
(NRULE_0204)
Riboflavin synthaseDEFDS_1097
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFDEFDS_1953

ゲノム配列情報

BioProject IDPRJDA37285
ローカスタグDEFDS
INSDC entriesAP011529
ステータスComplete
解析状況
コンティグ数2
サイズ(bp) 2,542,933
遺伝子数 2,420
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Deferribacter desulfuricans sp. nov., a novel sulfur-, nitrate- and arsenate-reducing thermophile isolated from a deep-sea hydrothermal vent. (Int J Syst Evol Microbiol. 2003) PMID: 12807210
  • Bacterial lifestyle in a deep-sea hydrothermal vent chimney revealed by the genome sequence of the thermophilic bacterium Deferribacter desulfuricans SSM1. (DNA Res. 2010) PMID: 20189949

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
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