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微生物 : Calditerrivibrio nitroreducens

微生物株情報

NBRC番号 101217
学名 Calditerrivibrio nitroreducens
別名（シノニム） 該当データなし
由来 NBRC (T. Iino, Yu37-1)
他保存機関番号 DSM 19672
他株番号 Yu37-1
参考文献
18599715
Calditerrivibrio nitroreducens gen. nov., sp. nov., a thermophilic, nitrate-reducing bacterium isolated from a terrestrial hot spring in Japan. (Int J Syst Evol Microbiol. 2008)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseCalni_0907
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
必須A
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseCalni_0720
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseCalni_1410
Metal-binding protein(NFUNC_0105)
必須C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinCalni_1526 Calni_0690
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinCalni_1526 Calni_0690
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinCalni_0689 Calni_1522
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinCalni_1521
Nitrogenase(NFUNC_0094)
必須A
NIFD
(NRULE_0347)
Nitrogenase molybdenum-iron protein alpha chainCalni_0685
NIFK
(NRULE_0348)
Nitrogenase molybdenum-iron protein beta chainCalni_0686
VNFH
(NRULE_0353)
Nitrogenase reductaseCalni_0684
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseCalni_1116
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseCalni_1118
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseCalni_0201 Calni_0607
PANC
(NRULE_0118)
Pantothenate synthetaseCalni_1117
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseCalni_1658
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Calni_1658
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDCalni_1660
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseCalni_1657
RIBE
(NRULE_0204)
Riboflavin synthaseCalni_1659
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFCalni_0475

ゲノム配列情報

BioProject IDPRJNA49523
ローカスタグ
INSDC entriesCP002347
ステータスComplete
解析状況Finished
コンティグ数2
サイズ(bp) 2,216,552
遺伝子数 2,100
フィニッシングゴールFinished
アセンブル方法Newbler v. 2.3
冗長度
シーケンス方法
  • Illumina
  • 454
参考文献
  • Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1). (Stand Genomic Sci. 2011) PMID: 21475587

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
666.3 KB 633.2 KB 446.5 KB 167.9 KB