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微生物 : Clostridium clariflavum

微生物株情報

NBRC番号 101661
学名 Clostridium clariflavum
別名（シノニム） 該当データなし
由来 Nihon Univ. (K. Ueda, EBR45)
他保存機関番号 DSM 19732
他株番号 EBR45
参考文献
16672520
Isolation and characterization of a new Clostridium sp. that performs effective cellulosic waste digestion in a thermophilic methanogenic bioreactor. (Appl Environ Microbiol. 2006)
19542130
Clostridium clariflavum sp. nov. and Clostridium caenicola sp. nov., moderately thermophilic, cellulose-/cellobiose-digesting bacteria isolated from methanogenic sludge. (Int J Syst Evol Microbiol. 2009)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseClocl_0406
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
必須D
ANT3
(NRULE_0154)
Streptomycin 3''-adenylyltransferaseClocl_3451
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseClocl_2629
TRPE
(NRULE_0143)
Anthranilate synthase component IClocl_2630
Arsenical resistance(NFUNC_0004)
必須F
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBClocl_0155 Clocl_2973
ARSC3
(NRULE_0019)
Arsenate reductaseClocl_0227
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseClocl_3365
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinClocl_0494
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinClocl_0513 Clocl_1299
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinClocl_1299 Clocl_0513
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinClocl_1300
Nitrogenase(NFUNC_0094)
必須A
NIFD
(NRULE_0347)
Nitrogenase molybdenum-iron protein alpha chainClocl_1264
NIFK
(NRULE_0348)
Nitrogenase molybdenum-iron protein beta chainClocl_1265
VNFH
(NRULE_0353)
Nitrogenase reductaseClocl_1261 Clocl_2140 Clocl_2292
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseClocl_1126
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Clocl_1126
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDClocl_1124
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseClocl_1127
RIBE
(NRULE_0204)
Riboflavin synthaseClocl_1125
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFClocl_2449
Streptomycin resistance(NFUNC_0054)
必須B
ANT3
(NRULE_0154)
Streptomycin 3''-adenylyltransferaseClocl_3451

ゲノム配列情報

BioProject IDPRJNA72805
ローカスタグCLOCL
INSDC entriesCP003065
ステータスComplete
解析状況Finished
コンティグ数1
サイズ(bp) 4,897,678
遺伝子数 3,892
フィニッシングゴールFinished
アセンブル方法Newbler v. 2.3
冗長度
シーケンス方法
  • 454
  • Illumina
参考文献
  • Complete Genome Sequence of Clostridium clariflavum DSM 19732. (Stand Genomic Sci. 2012) PMID: 22675603

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
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