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微生物 : Corynebacterium terpenotabidum

微生物株情報

NBRC番号 14764
学名 Corynebacterium terpenotabidum
別名（シノニム） 該当データなし
由来 IFO 14764 <- OUT (Y. Yamada, Y-11)
他保存機関番号 CCUG 44585=CCUG 46354=CIP 105927=DSM 44721=JCM 10555=LMG 22191=VKM Ac-2071
他株番号 Y-11
参考文献
869527
Oxidation of linear terpenes and squalene variants by Arthrobacter sp. (Appl Environ Microbiol. 1977)
1115507
Oxidative degradation of squalene by Arthrobacter species. (Appl Microbiol. 1975)
10028267
Corynebacterium terpenotabidum sp. nov., a bacterium capable of degrading squalene. (Int J Syst Bacteriol. 1999)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
n-alkane hydroxylation(NFUNC_0008)
必須B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseA606_11475
任意 
RUBA
(NRULE_0039)
RubredoxinA606_11485 A606_11490
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinA606_08180 A606_04525 A606_11150
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseA606_05615
Betaine biosynthesis (from choline)(NFUNC_0049)
必須C
CHOX
(NRULE_0178)
Choline oxidaseA606_06065
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseA606_11225
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseA606_07580
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinA606_09130
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinA606_09145 A606_09660
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinA606_09145 A606_09660
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseA606_01990
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseA606_04335
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseA606_05375
PANC
(NRULE_0118)
Pantothenate synthetaseA606_01985
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseA606_02185
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseA606_02175
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterA606_11205 A606_02380 A606_06075
E
OPUE
(NRULE_0222)
Sodium/proline symporterA606_07485
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSA606_06160
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTA606_06150

ゲノム配列情報

BioProject IDPRJNA168617
ローカスタグA606
INSDC entriesCP003696
ステータスComplete
解析状況
コンティグ数1
サイズ(bp) 2,751,233
遺伝子数 2,369
フィニッシングゴール
アセンブル方法Newbler v. 2.3
冗長度
シーケンス方法
  • Sanger dideoxy sequencing
  • 454
  • Illumina
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
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