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Microbe : Catenulispora acidiphila

Microbe Description

NBRC No. 102108
Scientific name Catenulispora acidiphila
Synonymous name Not assigned
History NRRL B-24433 <- L. Cavaletti <- E. Busti, ID 139908
Other culture collection No. BCRC 16841=CIP 109381=DSM 44928=JCM 14897=NRRL B-24433
Other No. ID139908
Reference
16902001
Catenulispora acidiphila gen. nov., sp. nov., a novel, mycelium-forming actinomycete, and proposal of Catenulisporaceae fam. nov. (Int J Syst Evol Microbiol. 2006)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseCaci_0990
Alginate degradation(NFUNC_0062)
RequireB
ALY
(NRULE_0227)
Alginate lyaseCaci_7491 Caci_1606
n-alkane hydroxylation(NFUNC_0008)
RequireB
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseCaci_1373
Participant 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinCaci_4533 Caci_0116 Caci_0421 Caci_1679 Caci_2184 Caci_2265 Caci_2527 Caci_4332 Caci_7447 Caci_4400 Caci_5615 Caci_4970 Caci_4895
D-allose biosynthesis(NFUNC_0077)
RequireA
LRHI
(NRULE_0242)
L-rhamnose isomeraseCaci_6712
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireA
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseCaci_0513
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
RequireC
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseCaci_4744
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireB
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseCaci_6179
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ACaci_5163
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseCaci_3668 Caci_0039
TRPE
(NRULE_0143)
Anthranilate synthase component ICaci_5714
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseCaci_6778
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseCaci_7544
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ACaci_5163
Bioplastic degradation(NFUNC_0015)
RequireB
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseCaci_3591 Caci_3290 Caci_4958
GABA biosynthesis(NFUNC_0066)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseCaci_8660
Gentamicin resistance(NFUNC_0053)
RequireA
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseCaci_4744
Participant 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseCaci_0513
Kanamycin resistance(NFUNC_0052)
RequireB
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseCaci_4744
C
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseCaci_6179
Participant 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseCaci_0513
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseCaci_1726
D
ERE
(NRULE_0168)
Erythromycin esteraseCaci_3801
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinCaci_1719 Caci_8651 Caci_8653
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinCaci_8652 Caci_7906 Caci_7421 Caci_2783 Caci_2418 Caci_2151 Caci_2031 Caci_0910
J
SMTA
(NRULE_0009)
MetallothioneinCaci_2282
Metallothionein(NFUNC_0006)
RequireA
SMTA
(NRULE_0009)
MetallothioneinCaci_2282
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinCaci_2418 Caci_2151 Caci_0910 Caci_8652 Caci_7906 Caci_7421 Caci_2783 Caci_2031
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseCaci_8382
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseCaci_1694
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseCaci_4552 Caci_0833 Caci_3116
PANC
(NRULE_0118)
Pantothenate synthetaseCaci_8383
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ACaci_5163
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseCaci_2644 Caci_3724 Caci_2546
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseCaci_4324 Caci_3711
Vancomycin resistance (via D-Ala-D-Lac precursor)(NFUNC_0089)
RequireA
VANA
(NRULE_0265)
D-alanine--D-lactate ligaseCaci_5793
VANH
(NRULE_0266)
D-specific alpha-keto acid dehydrogenaseCaci_5794
VANX
(NRULE_0267)
D-alanyl-D-alanine dipeptidaseCaci_5792
Participant 
VANR
(NRULE_0284)
Two-component system response regulator VanRCaci_5788
 
VANS
(NRULE_0290)
Two-component system histidine kinase VanSCaci_5789
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSCaci_2349
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTCaci_2350

Genomic Overview

BioProject IDPRJNA21085
Locus_tagCACI
INSDC entriesCP001700
Sequence statusComplete
Current status
Contig number1
Size(bp) 10,467,782
Gene 8,914
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Complete genome sequence of Catenulispora acidiphila type strain (ID 139908). (Stand Genomic Sci. 2009) PMID: 21304647

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
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FASTA
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TSV
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3.0 MB 2.7 MB 1.9 MB 690.6 KB